Pairwise Alignments

Query, 1016 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1065 a.a., efflux RND transporter permease subunit from Dyella japonica UNC79MFTsu3.2

 Score =  528 bits (1359), Expect = e-153
 Identities = 325/1049 (30%), Positives = 547/1049 (52%), Gaps = 48/1049 (4%)

Query: 2    DIARYTLAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVSD 61
            +++ + L  ++ V  L+ +  + G +SY +L + EDP F  +  VI + +PGA A++V D
Sbjct: 17   NLSAWALRHQSFVIFLMVMITVFGMLSYSRLSQSEDPPFTFKVMVIQSFWPGADAKQVQD 76

Query: 62   EVTDVIEGAVQALQELKEVKSVSMQGRSEVTVEIKLEFAKSSAQLQQVWDKLRRKVADAQ 121
            +VTD I   +Q    +  ++S S  G S +   IK     SS  +   W ++R+KV D +
Sbjct: 77   QVTDRISRKLQETPSIDFLRSYSRPGESLIFFNIKDSAPASS--VPDTWYQVRKKVGDIR 134

Query: 122  RQLPPGAGASIVNDDFSDVYALFYAVTGEGFSDKQLQDYVDTLRRELVLVPGVAKAATLA 181
             QLPPG      ND+F DVY   YA+ G+GF+  QL DY D LR EL+ VPGV K   L 
Sbjct: 135  AQLPPGVQGPFFNDEFGDVYTNIYALEGDGFTPAQLHDYADQLRAELLRVPGVGKVDFLG 194

Query: 182  EQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISSLA 241
            +Q + I IE+ + R+++ G+S +++ + +  Q+ V  AG +     R+ V P    S +A
Sbjct: 195  DQNQRITIEIPNARLSKLGISPQQIAEAINAQNAVASAGVMSTADDRVYVRPSGQFSDVA 254

Query: 242  DLTNLQVAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVEMG 301
             L N  +  G  +   RLGDIA I RGY +P    +R+  Q+ +G GI+   GG+V+ +G
Sbjct: 255  ALENTLLRAGGQS--FRLGDIATIRRGYDDPPGQQVRFMSQQVLGVGITMQPGGDVIHLG 312

Query: 302  DAVKARLAELESQRPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGVRS 361
             A+    A L+ + P G+ L  ++    +V  SV +F++++  AVAIV +V LL +G+R+
Sbjct: 313  KALDEATARLQKRLPAGLKLAEVTSMPHAVAHSVDDFLESVAEAVAIVLLVSLLSLGLRT 372

Query: 362  GVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVRFQQEP 421
            G+++   +   +A T   M +  I + ++SLG L++ALG+LVD+AI+  + + V+ +Q  
Sbjct: 373  GMVVVISIPFVLAATALCMELMGIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVKLEQ-- 430

Query: 422  NADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFWVILYSMFLSWV 481
               + +  +    +T +P+L GT+V +  F  I L+ S  GEY  S+F V   ++ LSW+
Sbjct: 431  GWSRTRAAAFAYTSTAFPMLTGTLVTVSGFLPIALAKSGTGEYTRSIFEVSAIALLLSWL 490

Query: 482  FAVTVTPMLCHDFL--------------------------RVKAPTK-------EAKPSK 508
             AV V P+L + FL                          R  A T+       E   + 
Sbjct: 491  AAVIVIPLLGYHFLPEHHARVQPGSEWWARFMPARWNEARRANAKTRPEHGGDIEIYDTA 550

Query: 509  LVTGYKAVLQWVLSHRVVSCAMLLGTLVAAVWGAQFIPPGFMPESQRPQFVVDVYLPQGS 568
                ++ +L + L+HRV+   + +   V ++ G   +P  F P S RP+ ++D+ LP+G+
Sbjct: 551  FYQRFRRMLHYCLTHRVLVLVVTVVLFVVSMAGFGLVPKQFFPSSDRPELLIDLRLPEGA 610

Query: 569  DIRRTEQVVASIEKDVTQKDGITNITSFIGGGGLRFMLTYSPEARNPSYGQLLIDIDDYT 628
                T   V  +E+ +  +  + N  SF+G G  RF L    +   P++ Q ++   D  
Sbjct: 611  SFDATLVQVKRMEQVLKDRKEVANYVSFVGSGAPRFYLPLDQQLGQPNFAQFVVTAKDVE 670

Query: 629  KIAPLVGELQNELDAKYPDASIKVWKFMLGRGGGKKIEAGFKGPDSHVLRQLAEQAKAIM 688
            +   L   L + L   +     +V +   G   G  ++    G D   +R +AE+   +M
Sbjct: 671  QREALAKALDSVLAHDFSAVRTRVSRLENGPPVGFPVQFRVSGDDIATVRGIAEKIATVM 730

Query: 689  HNDPNLIAVQDDWRQQVPVLQPV---YSAQEAQRLGLTTQEISAAIAQTLNGRNVGVYRE 745
              DP    VQ DW +  P  + V        A+RLG+++Q+++  +A +L+G  V  YRE
Sbjct: 731  RADPRTRNVQFDWDE--PAERSVRFDIDQAAARRLGVSSQDVADFLAMSLSGTTVTQYRE 788

Query: 746  GNDLIPLMVRAPENERHHERAIENSEVFSAQAGRYIPVSQLVDSVDTVYQDALLRRINRM 805
             + LI + +RAP++ER     IE         G  IP++QL   V    +  ++   +R 
Sbjct: 789  RDKLIGVDLRAPKSERVQPDQIERL-ALPTPGGAAIPLAQL-GKVHYGLEYGVIWARDRQ 846

Query: 806  PTILVQADPAPGVMTADAFNNVREKIEQIE--LPAGYELIWYGEYKASKDANEGLALSAP 863
            P+I VQ+D   G    D  N +  K+ ++   LP GY +   G  + +  A   +    P
Sbjct: 847  PSINVQSDTRNGAQGLDVTNAIDAKLGELRKGLPVGYRIEVGGSVEQNAKAQGSINEQMP 906

Query: 864  YGFAAMILAVVFMFNALRQPLVIWMTAPFAVVGVTIGLIAFQTPFEFMAILGFLSLIGMM 923
                A++  ++    ++ +  ++ +TAP  ++GV   L+ F+ PF F+A+LG +++ G++
Sbjct: 907  LMVIAVLTLLMIQLQSIGRTFMVVLTAPLGLIGVIASLLLFRQPFGFVAMLGTIAMFGII 966

Query: 924  VKNAIVLVDQADAEIRAGKEAYFAIIDAAVSRARPVLLGAFTTILGVAPLLVDPFFKSMA 983
            ++N+++LVDQ + +IR G   + AI+ A V R RP+ L A   +L + PLL   FF  MA
Sbjct: 967  MRNSVILVDQIEQDIRDGHSRWEAIVGATVRRFRPITLTAAAAVLALIPLLRSNFFGPMA 1026

Query: 984  VTIMFGLLFATILTLVVIPLFYAVLFRVK 1012
              +M G+  ATILTL  +P  YAV +RV+
Sbjct: 1027 TALMGGITVATILTLFYLPALYAVWYRVR 1055