Pairwise Alignments

Query, 1016 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1015 a.a., efflux RND transporter permease subunit from Phocaeicola vulgatus CL09T03C04

 Score =  607 bits (1565), Expect = e-177
 Identities = 346/1018 (33%), Positives = 575/1018 (56%), Gaps = 12/1018 (1%)

Query: 1    MDIARYTLAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVS 60
            M+I +Y+L  R  ++  +A+ LIGG IS+ KL + ED  FVI+ AV+VT YPGA   EV 
Sbjct: 1    MNIPKYSLENRKVIYFFLAILLIGGVISFFKLPKKEDAPFVIKTAVLVTQYPGANPHEVE 60

Query: 61   DEVTDVIEGAVQALQELKEVKSVSMQGRSEVTVEIKLEFAKSSAQLQQVWDKLRRKVADA 120
              +T+ IE  +Q++ ++ ++KS S  G S++++E++         ++  WD+LRRKVA+ 
Sbjct: 61   KLITEPIEREIQSMTDVYQIKSESYFGLSKISIELQPTIDPDYMPVK--WDELRRKVANI 118

Query: 121  QRQLPPGAGASIVNDDFSDVYALFYAVTG-EGFSDKQLQDYVDTLRRELVLVPGVAKAAT 179
            Q +LP GA    VNDDF DVY ++YA+T  EGFS   L+D+   +R +L  + GV K   
Sbjct: 119  QPKLPSGASTITVNDDFGDVYGIYYALTADEGFSYTDLRDWAQRIRTQLTPIEGVQKVML 178

Query: 180  LAEQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISS 239
              EQ E I +++S+ +++  G+    ++ +LQKQ++    G +  +  ++ +  +   +S
Sbjct: 179  YGEQTEVINVKISTSKLSALGIDPTSIMGILQKQNIQVNTGDIATEIYQLRLRTEGTYTS 238

Query: 240  LADLTNLQVAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVE 299
            L D+ N Q+ +  +    RLGDIA + RGY +P S LMR NG+RAIG G+++    NVV 
Sbjct: 239  LEDIEN-QLIISKDGREARLGDIATVERGYYDPPSTLMRVNGKRAIGIGVASGAKDNVVA 297

Query: 300  MGDAVKARLAELESQRPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGV 359
            +G AV  RLAE+E   P+G++L  +  +      +   FI NLI ++ IV +++ + MG 
Sbjct: 298  VGKAVDERLAEIEQLLPIGIELTSLYPEDKIADEANNGFILNLIESLVIVILIIFVVMGS 357

Query: 360  RSGVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVRFQQ 419
            R+G++IG  LL +V GTL +ML+  + + R SL A IIA+GMLVDNAIVVTD   +  ++
Sbjct: 358  RAGMLIGSSLLFSVGGTLLIMLMWGVGLNRTSLAAFIIAMGMLVDNAIVVTDNAQIGIKR 417

Query: 420  EPNADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFWVILYSMFLS 479
                 + Q + E     +W LLG T + I +F  + L+P+ + E    LF V+  S+ LS
Sbjct: 418  --GKSRYQSLIEGAIKPQWALLGATFIAICSFLPLYLAPASVAEIVKPLFVVLAVSLGLS 475

Query: 480  WVFAVTVTPMLCHDFLRVKAP---TKEAKPSKLVTGYKAVLQWVLSHRVVSCAMLLGTLV 536
            W+ A+  T    +  L+   P    K+   +KL   ++  L  ++  R V+   +  TLV
Sbjct: 476  WILALCQTTTFGNFILKEAVPGGAMKDPYDTKLYHKFEKFLTLLIKRRFVTLTTVFVTLV 535

Query: 537  AAVWGAQFIPPGFMPESQRPQFVVDVYLPQGSDIRRTEQVVASIEKDVTQKDGITNITSF 596
             ++     +P  F P+  +P F  D+  P+G  I   +Q V  +E  +   + + + +  
Sbjct: 536  LSLVIMAVMPQSFFPKMNKPYFRADLVFPEGFSIHAVDQDVMKVEDYLKNHEKVKSYSVT 595

Query: 597  IGGGGLRFMLTYSPEARNPSYGQLLIDIDDYTKIAPLVGELQNELDAKYPDASIKVWKFM 656
            +GG  LR+ L  S      +Y  ++++  D    A +  +    +   +P+   +   F 
Sbjct: 596  LGGTPLRYYLASSSFGPKSNYANVMVETKDPEDAAEVEQQFYEHMTQNFPNIITRSALFA 655

Query: 657  LGRGGGKKIEAGFKGPDSHVLRQLAEQAKAIMHNDPNLIAVQDDWRQQVPVLQPVYSAQE 716
            L       IE GF G +   L  L E+AK I      +  ++ +W  +VPV +P++S Q+
Sbjct: 656  LSPVPEAAIEIGFIGENPDTLTALVERAKKIARQCDMVTDIRSNWGDKVPVWKPMFSQQK 715

Query: 717  AQRLGLTTQEISAAIAQTLNGRNVGVYREGNDLIPLMVRAPENERHHERAIENSEVFSAQ 776
              RLG+T Q+++ +     NG  +G YREG+  +P++++  + E+ +   +++  VFS +
Sbjct: 716  GLRLGITRQQVANSFRTATNGLPLGEYREGDVSLPILLKDEDVEKMNLNDVKSVPVFSTK 775

Query: 777  AGRYIPVSQLVDSVDTVYQDALLRRINRMPTILVQADPAPGVMTADAFNNVREKI-EQIE 835
             G  + V Q++D+    Y   ++RR NR   +++Q +P  G  T  AF  V   + EQ++
Sbjct: 776  -GNSVKVEQVIDNFALGYDYNVVRRFNRERCMMMQCEPKRGANTMAAFKQVLTAVQEQMQ 834

Query: 836  LPAGYELIWYGEYKASKDANEGLALSAPYGFAAMILAVVFMF-NALRQPLVIWMTAPFAV 894
            LP GY++ ++GE +    +N  LA + P  F  + + ++F+F +  R+P++I +  P   
Sbjct: 835  LPEGYKMKYFGEQETQDVSNAALAKNIPLTFLLIYVVLLFLFPSNYRKPVLIMLMLPLVF 894

Query: 895  VGVTIGLIAFQTPFEFMAILGFLSLIGMMVKNAIVLVDQADAEIRAGKEAYFAIIDAAVS 954
            +GV  GL+ F    +F AILG L LIGM +KNAIVLVD+   +++ GK A  A+++A  +
Sbjct: 895  IGVVWGLLLFGKSLDFFAILGLLGLIGMNIKNAIVLVDEIGLQLKDGKGAVPAVVEATKT 954

Query: 955  RARPVLLGAFTTILGVAPLLVDPFFKSMAVTIMFGLLFATILTLVVIPLFYAVLFRVK 1012
            R  PV + + TTILG+ PLL D  F  MA TIM GL  +T+LT+ V+P+ Y + F+++
Sbjct: 955  RIVPVTMASGTTILGMLPLLGDAMFAGMAATIMGGLFVSTVLTIFVLPVTYCIFFKIR 1012