Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Pseudomonas fluorescens FW300-N2E2

 Score =  107 bits (266), Expect = 7e-28
 Identities = 92/361 (25%), Positives = 159/361 (44%), Gaps = 26/361 (7%)

Query: 15  LLSAVIASALLLAGCG------EAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQ 68
           +L  V+   LLLAG        +    SAP P V  A+ + +     + L   G ++A Q
Sbjct: 9   MLGVVLLVVLLLAGYKAFSIYQQIQMFSAPKPPVSVAVAKAIEQPWQARLPTVGSLKALQ 68

Query: 69  RADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKA 128
             DL+  I+G +  +  + G +VK GQ L  LDS      LE A+ +L   + ++ R + 
Sbjct: 69  GVDLSLEIAGTVQKVQFQSGQKVKAGQPLLQLDSEVESALLETAEADLGLAQLDFGRGRQ 128

Query: 129 IFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQA 188
           +   +QAISK E D+++ +    +  V + K  L   QI APF G I  + ++    + +
Sbjct: 129 LV-GSQAISKGEFDRLSAQLKKNQATVNQLKASLAKKQILAPFSGTIGIRQVDVGDYLAS 187

Query: 189 NQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDS 248
             VI  LQDL+ L V   +P + +            +SA P Q F   +   + +    +
Sbjct: 188 GTVIATLQDLSSLYVDFYVPEQTVPRLAVAQPVNVSVSAYPGQTFVGTISAINPKVEDST 247

Query: 249 QTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVN 308
           +   V     +  G +++PGM A +  +     D    I +P +A+     G     V  
Sbjct: 248 RNVLVRATLANPDG-KLLPGMFANLQVIL---PDVAAGIVVPESAVTYTLYGNSMYVVAQ 303

Query: 309 AQNQ---------------AEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMT 353
            +                 AE+R+V+ G     +V++T+ ++ G+QV+IAG   +  G  
Sbjct: 304 KKAADGTVEKDDKGQPVLIAERRFVETGERRDGQVLVTKGVQSGDQVVIAGQIKLDNGTP 363

Query: 354 V 354
           +
Sbjct: 364 I 364