Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., Efflux transporter, RND family, MFP subunit from Pseudomonas fluorescens FW300-N2E2

 Score =  117 bits (294), Expect = 4e-31
 Identities = 94/367 (25%), Positives = 171/367 (46%), Gaps = 21/367 (5%)

Query: 9   MAAKRSLLSAVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQ 68
           MA  R  L   +   +LLAGCG+   +    P V   + + V S+ A+ +T  G V+A  
Sbjct: 1   MAGPRIKLVVGLGLCVLLAGCGDEKPVEKALPRV--FVQQAVPSEYAASVTLTGDVQARV 58

Query: 69  RADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKA 128
           +ADL+FR+ G++ +  V  G +V   Q+LA LD RD +T +++A  ++   +   +++ A
Sbjct: 59  QADLSFRVGGKIIERKVDVGARVSARQVLARLDPRDLQTNVDSAAAQVAAEQARVKQSAA 118

Query: 129 IFEKTQAI-------------SKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVI 175
            F + Q +             ++A+L    +    A+ ++  A+ +L YT + A   G+I
Sbjct: 119 AFVRQQKLLPKGYTSQSEYDAAQAQLRSSQSALTAAQAQLANAREQLSYTALIAEAPGII 178

Query: 176 SEKTIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDL 235
           + +  E    VQA + I  L    + +    I   ++     +   I  L   P  +   
Sbjct: 179 TARQAEVGQVVQATEPIFSLARDGERDAVFNIYESLLSEPPSDPAIIISLLDNPAIKTTG 238

Query: 236 KLRTYSTQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALV 295
            +R  +   S+ + T  V +  +DL       GM    +  A   A   T   LP +AL 
Sbjct: 239 TVREITPAVSAQTGTVQVKVTLDDLP-----EGMRLGSVVSATAKAAGKTAFELPWSALT 293

Query: 296 PDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVR 355
             N  +  VW+V+++ +A+ + V +G     +V+++  LK GE++IIAG   +  G+ V 
Sbjct: 294 -KNLSEPAVWLVDSEGKAQLQTVTVGRYLTGKVIVSDGLKGGEKIIIAGGQLLHPGVRVE 352

Query: 356 PYTDNNG 362
              + +G
Sbjct: 353 IAENTSG 359