Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., Efflux membrane fusion protein, RND family from Pseudomonas fluorescens FW300-N2E2

 Score =  106 bits (264), Expect = 1e-27
 Identities = 101/359 (28%), Positives = 171/359 (47%), Gaps = 38/359 (10%)

Query: 19  VIASALLLAGCGEAPQISAPAPVVKPALT-EIVASQRASDLTFNGVVRAAQRADLAFRIS 77
           +++  LLLA C    Q  AP   V+P L+ E+ A  + +   F G ++A   +++ FR+ 
Sbjct: 6   MVSVGLLLAACS---QEEAPPEPVRPVLSIEVRALDQQALGRFAGNIQARYESNVGFRVP 62

Query: 78  GRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEY-------RRAKAIF 130
           GR+    V  G +VKKG LLA+LD  D +  L AAQ +L   E +Y       RR + +F
Sbjct: 63  GRIASRNVDVGAEVKKGDLLATLDPTDQQNQLRAAQGDLARIEAQYINAQANARRQQQLF 122

Query: 131 EK---TQA---ISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFA 184
           ++    QA   I++ +L       + A+  VE+A+ +L Y+++    D V++    E   
Sbjct: 123 DRGVGAQAQLDIAQTDLKTTGASLEQARASVEQARDQLNYSELHTDHDAVVTAWNAEAGQ 182

Query: 185 QVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYST-- 242
            V A Q ++ L   +  E  I++P  ++       R  A++      Q D  + T +T  
Sbjct: 183 VVTAGQQVVTLARPDIKEAVIDLPADLV------DRLPADVVFEVTAQMDPSIHTTATVR 236

Query: 243 ----QPSSDSQTYSVVLGFEDL-KGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPD 297
               Q  S ++T    L   D   GFR+   +S  +    +        I LPL+AL  +
Sbjct: 237 EIEPQAQSATRTRRARLTLADTPPGFRLGTAISVTLSSTIE------PRIELPLSAL-QE 289

Query: 298 NQGKQFVWVVNAQNQ-AEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVR 355
             GK  +W+V+  +Q    R V I       V++   +K G++V+ AGV+S++ G  V+
Sbjct: 290 IDGKARIWLVDPHSQTVSPRDVRILERSASSVLVANGIKAGDRVVSAGVNSLQPGQKVK 348