Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., RND efflux membrane fusion protein from Pseudomonas fluorescens FW300-N2E2

 Score =  141 bits (356), Expect = 2e-38
 Identities = 115/364 (31%), Positives = 178/364 (48%), Gaps = 32/364 (8%)

Query: 16  LSAVIASALLLAGCGE---APQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADL 72
           L+  +  A LL+ CG     P    PA VVKP       S +A D ++ G VRA    DL
Sbjct: 8   LAVPVTLAFLLSACGHDEPVPVAVRPAMVVKPQ-----PSVQAMD-SYPGEVRARFEPDL 61

Query: 73  AFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTE-------QEYRR 125
           AFRI G+++   V+EG +VK  Q LA LD  D +  LEAA+ ++   E        E  R
Sbjct: 62  AFRIGGKVSRRLVEEGQRVKANQPLAELDPEDVRLQLEAARAQVAAAEANLNLVRAERDR 121

Query: 126 AKAIFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLE-------YTQITAPFDGVISEK 178
            K + E+ Q +S+++ D   N Y     R+++ K + +       Y+ + AP DGV++ +
Sbjct: 122 YKTLMER-QMVSRSQYDNAENLYRSGTARLKQIKAEFDVANNQASYSILRAPQDGVVARR 180

Query: 179 TIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLR 238
           ++E    V A Q +  L    + EV I +P +             EL + P+Q+F  ++R
Sbjct: 181 SVEVGQVVSAGQTVFTLATDGEREVLISLPEQGFGRFKIGQPVSVELWSQPDQRFSGRIR 240

Query: 239 TYSTQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKV-IPVADKPADENTLITLPLTALVPD 297
             S      S+T++  + F          G SA+V I  ADK       +++PL+AL  +
Sbjct: 241 ELSPAADPKSRTFAARVAF-TAGNVPAELGQSARVFIQTADK-----VPLSVPLSALTAE 294

Query: 298 NQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRPY 357
           N G  +VWVVNA N  +K  V +G   +  V + + L P + V+ AGV  + +G  VRP 
Sbjct: 295 N-GATYVWVVNANNTLKKVPVRVGAFGEKTVPVLEGLGPDDWVVAAGVHVLLDGQQVRPV 353

Query: 358 TDNN 361
             +N
Sbjct: 354 DRSN 357