Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., RND transporter from Pseudomonas fluorescens FW300-N2C3

 Score =  101 bits (252), Expect = 3e-26
 Identities = 90/358 (25%), Positives = 157/358 (43%), Gaps = 20/358 (5%)

Query: 15  LLSAVIASALLLAGCG------EAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQ 68
           +L  V+   LLLAG        E    S P P +  A+         + L   G ++A Q
Sbjct: 9   MLGVVLLVVLLLAGYKAFSVYQEIQSFSEPKPPISVAVATAAQQPWQARLPTVGSLKALQ 68

Query: 69  RADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKA 128
             DL+  I+G +  +  + G +VK GQ L  LDS      LE A+ +L  ++ ++ R + 
Sbjct: 69  GVDLSLEIAGTVQKVQFQSGQKVKVGQPLLQLDSEVESALLETAEADLGLSQVDFGRGRQ 128

Query: 129 IFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQA 188
           +   +QAISK E D+++ +    +  V + K  L    I APF G I  + ++    + +
Sbjct: 129 LV-GSQAISKGEFDRLSAQLKKNQATVNQLKASLAKKHILAPFSGTIGIRQVDVGDYLAS 187

Query: 189 NQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDS 248
             VI  LQDL+ L V   +P + +            +SA P Q F   +   + +    +
Sbjct: 188 GTVIATLQDLSSLYVDFYVPEQSVPRLAVAQSVNVSVSAYPGQTFVGTISAINPKVEDST 247

Query: 249 QTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPA------DENTLITLPLTALVPDNQGKQ 302
           +   V     +  G +++PGM A +  +    A      +     TL   ++    Q K 
Sbjct: 248 RNVLVRATLANPDG-KLLPGMFANLQVILPDVAAGIVVPESAVTYTLYGNSMYVVTQKKA 306

Query: 303 FVWVVNAQNQ------AEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTV 354
               V   ++      AE+R+V+ G     +V++++ ++ GEQV+IAG   +  G  +
Sbjct: 307 ADGTVEKDDKGQPVLIAERRFVETGERRDGQVLVSKGVQSGEQVVIAGQIKLDNGTPI 364