Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., RND transporter from Pseudomonas fluorescens FW300-N2C3

 Score =  140 bits (353), Expect = 5e-38
 Identities = 114/364 (31%), Positives = 175/364 (48%), Gaps = 32/364 (8%)

Query: 16  LSAVIASALLLAGCGE---APQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADL 72
           L+  +A   LL+ CG     P    PA VVKP       S +A D ++ G VRA    DL
Sbjct: 8   LAVPVALVFLLSACGHDEPVPVAVRPAMVVKPE-----PSAQAMD-SYPGEVRARFEPDL 61

Query: 73  AFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALE-------AAQLELKNTEQEYRR 125
           AFRI G+++   V+EG +VK  Q LA LD  D +  LE       AA+  L     E  R
Sbjct: 62  AFRIGGKVSRRLVEEGQRVKANQPLAELDPEDVRLQLEATRAQVAAAEANLNLVRAERDR 121

Query: 126 AKAIFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLE-------YTQITAPFDGVISEK 178
            K + E+ Q +S+++ D   N Y     R+++ K + +       Y+ + AP DGV++ +
Sbjct: 122 YKTLMER-QMVSRSQYDNAENLYRSGTARLKQIKAEFDVANNQASYSVLRAPQDGVVARR 180

Query: 179 TIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLR 238
           ++E    V A Q +  L    + EV I +P +             EL + P+Q+F  ++R
Sbjct: 181 SVEVGQVVSAGQTVFTLATDGEREVLISLPEQGFGRFKIGQPVSVELWSQPDQRFSGRIR 240

Query: 239 TYSTQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKV-IPVADKPADENTLITLPLTALVPD 297
             S      S+T++  + F          G SA+V I  ADK       +++PL+AL  +
Sbjct: 241 ELSPAADPKSRTFAARVAF-TAGSVPAELGQSARVFIQTADK-----VPLSVPLSALTAE 294

Query: 298 NQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRPY 357
           N G  +VWVVN  N  +K  V +G   +  V + + L P + V+ AGV  + +G  VRP 
Sbjct: 295 N-GATYVWVVNTNNTLKKVPVRVGAFGEKTVPVLEGLSPDDWVVAAGVHVLLDGQQVRPV 353

Query: 358 TDNN 361
             +N
Sbjct: 354 DRSN 357