Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Pseudomonas fluorescens FW300-N1B4

 Score = 95.1 bits (235), Expect = 3e-24
 Identities = 90/373 (24%), Positives = 156/373 (41%), Gaps = 30/373 (8%)

Query: 15  LLSAVIASALLLAGCGE------APQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQ 68
           +L  V+   L+LAG             S P P +  A+         S L   G + A Q
Sbjct: 9   MLGVVLLIVLVLAGYKAFSIYTMMQGFSVPKPPISVAVATATERPWQSRLPTVGTLTALQ 68

Query: 69  RADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKA 128
             DL+  I+G + ++  + G +VK GQ +  LD+      L  AQ +L   + +Y R   
Sbjct: 69  GVDLSLEIAGTVKEVQFESGQKVKAGQPILQLDTAVETALLATAQADLGLAQLDYGRGSQ 128

Query: 129 IFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQA 188
           +   +QAISK E D+++     ++  V + K  LE  +I APF G I  + ++    V +
Sbjct: 129 LVG-SQAISKGEFDRLSAVLQKSRATVNQLKAALERKRILAPFSGTIGIRQVDVGDYVAS 187

Query: 189 NQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDS 248
             +I  LQD++ L V   +P + +            +SA P + F   +   + +  S +
Sbjct: 188 GTMIATLQDISSLYVDFFVPEQSVPKIALGQPVQVIVSAYPTESFPGTISAINPKVESST 247

Query: 249 QTYSV--VLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWV 306
           +   V   L   D K   ++PGM A +  +   P      I +P +A+     G     V
Sbjct: 248 RNVLVRATLANPDDK---LLPGMFASLQVMLPDPQPR---IVVPESAITYTLYGNSLYVV 301

Query: 307 VNAQNQ---------------AEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREG 351
              + +               AE+R+++ G      V+IT+ ++ GE+V+  G   +  G
Sbjct: 302 AQKKAEDGSLEKDDKGEPILIAERRFIETGERRDGMVMITKGVQNGEKVVTGGQIKLDHG 361

Query: 352 MTVRPYTDNNGAQ 364
             +    D   A+
Sbjct: 362 AHIAISDDKTLAE 374