Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., RND efflux membrane fusion protein from Pseudomonas fluorescens FW300-N1B4

 Score =  137 bits (346), Expect = 3e-37
 Identities = 113/364 (31%), Positives = 180/364 (49%), Gaps = 32/364 (8%)

Query: 16  LSAVIASALLLAGCG--EAPQISA-PAPVVKPALTEIVASQRASDLTFNGVVRAAQRADL 72
           L+  ++ A LL+ CG  EAPQ++  PA VV+P       S +A + ++ G VRA    DL
Sbjct: 8   LALPVSLAFLLSACGHEEAPQVTVRPAMVVQPE-----PSAQAME-SYPGEVRARYEPDL 61

Query: 73  AFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALE-------AAQLELKNTEQEYRR 125
           AFRI G+++   V+EG +VK  Q LA LD +D +  LE       AA+  L     E  R
Sbjct: 62  AFRIGGKVSRRLVEEGQRVKADQPLAELDPQDVRLQLEATRAQVAAAEANLNLVRAERDR 121

Query: 126 AKAIFEKTQAISKAELDKVTNRYDLAKNRVEEAK-------RKLEYTQITAPFDGVISEK 178
            K + E+ Q +S+++ D   N Y   + R+++ K        +  Y  + AP DGV++++
Sbjct: 122 YKTLMER-QMVSRSQYDNAENLYRSGEARLKQIKAEFNVSTNQASYAVLRAPQDGVVAKR 180

Query: 179 TIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLR 238
            +E    V A Q +  L    + EV I +P +             EL   P+Q+F  ++R
Sbjct: 181 AVEVGQVVAAGQTVFTLATDGEREVLISLPEQSFGRFKVGQPVSVELWTQPDQRFPGRIR 240

Query: 239 TYSTQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKV-IPVADKPADENTLITLPLTALVPD 297
             S      S+T++  + F   K      G SA+V I  A+  A     +++PL+A+  +
Sbjct: 241 ELSPAADPKSRTFAARIAFTAGK-VPAELGQSARVFIQTAEVVA-----LSVPLSAVTAE 294

Query: 298 NQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRPY 357
           N G  +VWVV A N  +K  V +G   +  V + + L   + V+ AGV  + +G  VRP 
Sbjct: 295 N-GATYVWVVGANNTLKKAPVRVGAFGEKTVPVLEGLNASDWVVAAGVHVLHDGQQVRPV 353

Query: 358 TDNN 361
             +N
Sbjct: 354 DRSN 357