Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  143 bits (361), Expect = 6e-39
 Identities = 98/354 (27%), Positives = 179/354 (50%), Gaps = 9/354 (2%)

Query: 6   TRSMAAKRSLLSAVIASALLLAGCGEAPQISAPAPVVKPALTEIV--ASQRASDLTFNGV 63
           T +    ++ L+ +  +  LL GC    + +   P V  AL E +  A  +A  L F+GV
Sbjct: 4   TPAFPVSKAWLTIIACALPLLGGCSSEAEPAPEPPRV--ALVEPLRPAESKAEALRFSGV 61

Query: 64  VRAAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEY 123
           V++     L+F +SGR+  I + EG +V++GQ LA LD  D +  L  A+  L+  E + 
Sbjct: 62  VQSVTSTQLSFEVSGRIERILIDEGTRVRRGQTLAQLDRTDYRLQLREAEARLRQLEADL 121

Query: 124 RRAKAIFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENF 183
            R + +  +   ++ A ++ +      A+   + A+R ++++ +TAPFDGV++ +  E  
Sbjct: 122 ARKRTLLAE-GILAPAAIEALQANTVAARVARDSAQRNIDHSTLTAPFDGVVARRLAEPD 180

Query: 184 AQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELS-AIPNQQFDLKLRTYST 242
             V     +  +QD   +EV++++P    LS        AE    I + +  L+ + +ST
Sbjct: 181 MVVAVGTPVFEMQDNRHIEVSVDLPESAALSIPLGPELQAEAELVIADLRLPLRYKEHST 240

Query: 243 QPSSDSQTYSVVLGFEDLKGFRVMPGMSAKV-IPVADKPADENTLITLPLTALVPDNQGK 301
           QP   ++TY +VL  E  + F ++PGM+ +V +    +P  +N    LPL+AL   + GK
Sbjct: 241 QPREGARTYRLVLQGEPPEDFNLLPGMAMRVRLERPAQPETDNDGFRLPLSALQTGSDGK 300

Query: 302 QFVWVVNAQNQAEKRYVDIGTTYKDRVVIT-QHLKPGEQVIIAGVSSVREGMTV 354
            F+W   A  +A +  V++     D+ +I    L+    +I+AG S + +   +
Sbjct: 301 HFIWQA-ADGRARRLAVELQQVEGDQALIRGDALQAQLPIIVAGGSKLHDDQPI 353