Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  129 bits (324), Expect = 1e-34
 Identities = 103/357 (28%), Positives = 180/357 (50%), Gaps = 30/357 (8%)

Query: 21  ASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASDL--TFNGVVRAAQRADLAFRISG 78
           A AL+  G GE PQ   P PV+      +V  Q AS+   ++ G V A    +LAFRI G
Sbjct: 15  ALALVACGNGEPPQ-QLPRPVM------VVQPQPASEARESYPGEVHARYEPELAFRIGG 67

Query: 79  RLTDIAVKEGDQVKKGQLLASLDSRDAKTALE-------AAQLELKNTEQEYRRAKAIFE 131
           ++ +  V+ GD+V+K Q LA LD +D +  L+       AA+  L+  + E+ R KA+  
Sbjct: 68  KVVERLVEAGDRVRKDQPLARLDPQDVRLQLDGMRAQVAAAEANLRVAKAEHDRYKALLG 127

Query: 132 KTQAISKAELDKVTNRYDLAKNRVEEAK-------RKLEYTQITAPFDGVISEKTIENFA 184
           + Q +S+++ D   N Y  A  R+++A+        +++Y  + A  DG+I+++ IE   
Sbjct: 128 R-QLVSQSQFDNADNAYRAAAARLQQARAEFDVASNQVDYAVLRATSDGLIAQRRIEVGQ 186

Query: 185 QVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQP 244
            V A Q   +L    + EVAI++P + +           EL + P + +  K+R  S   
Sbjct: 187 VVAAGQTAFVLAADGEREVAIDLPEQSLERYRVGQDVEVELWSQPGRHYLGKIRELSPAA 246

Query: 245 SSDSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFV 304
            + S+TYS  + F +    + +P    +   V+ + A E   + +PL+AL  + QG+  V
Sbjct: 247 DAQSRTYSARVAFSE----QEVPAELGQSALVSIRRAGE-VALAVPLSALSAE-QGRAHV 300

Query: 305 WVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRPYTDNN 361
           W + A +  E+  V  G   +  V + + L+  + +++AGV  + +  +VRP   +N
Sbjct: 301 WRLKADSTVERVEVRTGPFGEQLVPVLEGLEADDWIVLAGVQMLSDHQSVRPVDRHN 357