Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  107 bits (268), Expect = 4e-28
 Identities = 91/357 (25%), Positives = 161/357 (45%), Gaps = 22/357 (6%)

Query: 15  LLSAVIASALLLAGCG------EAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQ 68
           +L AV+    +LA         +  Q  AP P +             S L   G +RA+Q
Sbjct: 8   MLGAVVVVVAILAALKFNSIYQQIQQFQAPKPAIDVETELARRMDWQSRLPAIGTLRASQ 67

Query: 69  RADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKA 128
             DL+  I+G +TD+  + G++V KGQ +  LDS   + +L +A+ +L  +  E++RA++
Sbjct: 68  GIDLSVEIAGTITDVQFQSGEKVSKGQPIVLLDSEMERASLASAEADLNLSRVEFQRARS 127

Query: 129 IFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQA 188
           + ++ QAIS++E D++      A+  V + +  L   +I APF G I  + ++    + A
Sbjct: 128 LLDR-QAISRSEYDRLNAESQKAEASVAQLRASLAKKRILAPFAGTIGIRQVDVGDYIAA 186

Query: 189 NQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDS 248
              I  LQDL+ L V   +  + +       +    ++A P+Q+F+  +   + +  + +
Sbjct: 187 GTPIATLQDLSTLYVDFFLAEQHVPLLALGQKVQLRVAAYPDQRFEGVITALNPKVETTT 246

Query: 249 QTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVN 308
           +   V     +  G R++PGM A +  +      E   + +P TA+     G   + V  
Sbjct: 247 RNVQVRAELANPDG-RLLPGMFADLQVLL---PTETAQVVVPETAITYTLYGNSVLLVTE 302

Query: 309 AQNQ-----------AEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTV 354
                           E+R+V  G       VI + L+ GEQVI AG   +  G  V
Sbjct: 303 GTPPEGVTTDEPYLVVERRFVTTGERRDGVTVILEGLEGGEQVITAGQLKLDSGAHV 359