Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 363 a.a., Secretion protein HlyD from Pseudomonas syringae pv. syringae B728a

 Score =  102 bits (255), Expect = 1e-26
 Identities = 101/373 (27%), Positives = 176/373 (47%), Gaps = 35/373 (9%)

Query: 1   MNPSFTRSMAAKRSLLSAVIASALLLAGCGEAPQISAPAPVVKPAL-TEIVASQRASDLT 59
           M+ S+  +    R  L  ++  AL   GC + P       V +P L TEIV  + AS   
Sbjct: 1   MSTSYAETRTRSRCWLICILIVAL--PGCRDKPLREV---VERPVLFTEIVDQRSASHGR 55

Query: 60  FNGVVRAAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNT 119
           F GV++      L FR++GRL     + GD+V+KG LLA+L+  D +  L A Q EL   
Sbjct: 56  FAGVIQPQYEVALGFRVAGRLASRHAEIGDRVRKGDLLATLEPGDQQHRLRARQAELGKA 115

Query: 120 EQEYRRAKAIFEKTQAI------SKAELDKVTN---RYDLAKNR----VEEAKRKLEYTQ 166
           +  +++A+    + Q +      S+A +D++ N     D  +N+    V++A   + YT 
Sbjct: 116 QSAWQQARDELTRYQQLYERGIGSRARMDQLDNDLRTQDALRNQARVAVQQAGDHVSYTH 175

Query: 167 ITAPFDGVISEKTIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELS 226
           ++A FDG+I+    E    +   Q ++ L   +  E  +++P    L  +     I  +S
Sbjct: 176 LSAEFDGLITGWQAEVGQVMATGQAVVSLARPDSREAVVDLP----LGSLDERHRIRVIS 231

Query: 227 AIPNQQFDL--KLRTYSTQPSSDSQTYSVVLGFED-LKGFRVMPGMSAKVIPVADKPADE 283
            I N+Q  +   +R  + Q +++++T  V L  ++    FR+  G +  V    D PA  
Sbjct: 232 QI-NEQLSVAADVRQLAPQINAETRTQRVRLALQNPADSFRL--GSTVTVEISGDAPAFH 288

Query: 284 NTLITLPLTALVPDNQGKQFVWVVN-AQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVII 342
                LP +A++    G   VWV++   +    R V +       V ++  L  GE+V+ 
Sbjct: 289 E----LPGSAVL-QRDGTYQVWVIDPTTSTLVPRAVQVLARSGSTVRVSGALHEGEKVVT 343

Query: 343 AGVSSVREGMTVR 355
           AGV+ ++ G  +R
Sbjct: 344 AGVNGMQSGQKIR 356