Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., Secretion protein HlyD from Pseudomonas syringae pv. syringae B728a

 Score =  113 bits (283), Expect = 7e-30
 Identities = 106/375 (28%), Positives = 173/375 (46%), Gaps = 35/375 (9%)

Query: 1   MNPSFTRSMAAKRSLLSAVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASDLTF 60
           +NP    ++    S    V+   L+++GCG+    SA    V+    E V +   + L F
Sbjct: 3   LNPDAFPALRRCVSRACGVVLITLMISGCGDKQTTSASP--VRAVKVETVRAGEGAALRF 60

Query: 61  NGVVRAAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELK--- 117
            G VR  +RA LAF  +G LT++ V  GD VK GQ+LA LD + A+  L+ AQ  L+   
Sbjct: 61  IGTVREQERASLAFESAGTLTELRVDIGDSVKPGQVLARLDPQPAQLRLQEAQAALRLAR 120

Query: 118 ----NTEQEYRR----------AKAIFEKTQAISK---AELDKVTNRYDLAKNRVEEAKR 160
                 ++ Y+R          A+++ E  Q+ S+   AEL +     DL       A+R
Sbjct: 121 AQALERQRNYQRQQNLLAAGSVAQSVVESAQSSSEQASAELIRTQAELDL-------ARR 173

Query: 161 KLEYTQITAPFDGVISEKTIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTR 220
           +L+ T++ APF G +  +  +  + + A QV++ ++   + +V   +P  +  S      
Sbjct: 174 ELDRTRLIAPFAGRVVARHAQPQSLLSAGQVVLDVESAAEQQVVAAVPLALADSLEPGDL 233

Query: 221 AIAELSAIPNQQFDLKLRTYSTQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKP 280
           A A  SA     FDL L   S  P +D       + F  L+    +P  S   + V   P
Sbjct: 234 ARASNSADGTAGFDLALEGIS--PRADDGLVRTAV-FRVLRPAGRLP--SGVTLLVQMHP 288

Query: 281 ADENTLITLPLTAL-VPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQ 339
           A +   +++PL AL +        V+V  +      R V +GT  + R +I   L  GEQ
Sbjct: 289 AADAQALSVPLQALWMGTGSHLAEVFVYQSGGTVAVRSVTLGTVREGRALIVSGLVAGEQ 348

Query: 340 VIIAGVSSVREGMTV 354
           V+ AG + +++G  V
Sbjct: 349 VVTAGAAFLQDGQPV 363