Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., Secretion protein HlyD from Pseudomonas syringae pv. syringae B728a

 Score =  114 bits (285), Expect = 4e-30
 Identities = 97/358 (27%), Positives = 167/358 (46%), Gaps = 28/358 (7%)

Query: 15  LLSAVIASALLLAGCG--EAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADL 72
           LL +++ S +LL+GCG  EAP    P PV      E+          F G ++A  ++ L
Sbjct: 8   LLGSLLLSGVLLSGCGKDEAP----PEPVRPVVFVEVRPESNQDFGRFAGNIQARYQSVL 63

Query: 73  AFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEY-------RR 125
            FR++GR+    V  G +VKKG LLA+LD  D +  + A Q +L N + +        RR
Sbjct: 64  GFRVAGRIARRDVDVGAEVKKGDLLATLDPTDQQNTVRARQGDLANVQAQLINAQANARR 123

Query: 126 AKAIFEK---TQA---ISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKT 179
            + +F++    QA   I+  +L   ++  + AK   ++A+ +L Y+++ +  D V++E  
Sbjct: 124 QQELFDRGVGAQAQLDIALTDLKTASSSQEQAKAAAQQARDQLSYSELRSDHDAVVTEWK 183

Query: 180 IENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRT 239
           +E    V A Q ++ L   +  E  I++P  +      +          P       +R 
Sbjct: 184 VEAGQVVTAGQEVVTLAQPDIKEAVIDLPDTLADQLPSDVVFTVASQLNPEVNTTATIRE 243

Query: 240 YSTQPSSDSQTYSVVLGFEDLKG-FRVMPGMSAKVIPVADKPADENTLITLPLTALVPDN 298
              Q    ++T    L        FR+   +S  +             + LP+ AL  + 
Sbjct: 244 IEPQADRTTRTRRARLSLAQTPAAFRLGTAISVTLSSTI------TPRMRLPINAL-QEV 296

Query: 299 QGKQFVWVVNAQNQA-EKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVR 355
            GK+ VW+V++Q+Q    R V I +   D  V+T  +K GE+V+ AGV+S++ G  V+
Sbjct: 297 DGKRQVWIVDSQSQTVNPRAVTIASRDSDSFVLTDGVKAGEKVVSAGVNSLKPGQKVK 354