Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 372 a.a., Secretion protein HlyD from Pseudomonas syringae pv. syringae B728a

 Score =  105 bits (261), Expect = 3e-27
 Identities = 92/357 (25%), Positives = 158/357 (44%), Gaps = 24/357 (6%)

Query: 15  LLSAVIASALL-LAGCGEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLA 73
           L++  +A+AL  LAGCGE    +   P V   +  + ++  A+ +   G V+A  +  L+
Sbjct: 8   LVTFGLAAALAALAGCGEEKPAAPELPRVY--VQTVKSADFAASVALTGDVQARVQTRLS 65

Query: 74  FRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKT 133
           FR++G++    V  GD+V   Q+LA LD +D +T +++A   +   +    +++A F + 
Sbjct: 66  FRVNGKIIQRNVDVGDRVTARQVLARLDPKDLQTNVDSAAAAVAAEQARVSQSRAAFVRQ 125

Query: 134 QAI------SKAELDKV-------TNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTI 180
           Q +      S++E D          +    A+ ++  A+ +L YT + A   GVI+ +  
Sbjct: 126 QKLLPKGYTSRSEYDSAQAAVRGSESSLKAAQAQLANAREQLGYTALVADAPGVITARQA 185

Query: 181 ENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTY 240
           E    VQA   I  L    D +    +   + +    N      L   PN +   K+R  
Sbjct: 186 EVGQVVQATMPIFDLARDGDRDAVFNVYESLFVQPPTNQAVQVTLLDNPNIKVSGKVREV 245

Query: 241 STQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPD--- 297
           +   S+ + T  + +  + L       GM    +      A  N  + LP  AL  D   
Sbjct: 246 TPAVSAQTGTLQIKIALDPLP-----EGMDLGSVVSVALSAPANASVELPWAALTKDLGE 300

Query: 298 NQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTV 354
             GK  VWVV+ Q +   R V +      +V+I   LK GE+V++AG   +   M V
Sbjct: 301 QLGKPAVWVVDEQGKVNLRKVTVTRYLTSKVIIGDGLKSGEKVVVAGGQLLHPDMQV 357