Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., multidrug efflux system protein from Sinorhizobium meliloti 1021

 Score =  117 bits (294), Expect = 4e-31
 Identities = 108/382 (28%), Positives = 177/382 (46%), Gaps = 40/382 (10%)

Query: 8   SMAAKRSLLSAVIASALLLAGC--GEAPQISAPAPVVKPALTEIVASQRASDLTFN---- 61
           +M   R +L+A +AS + LAGC   E  Q +A AP   P     V + +A  L       
Sbjct: 4   AMRMNRPILAAALASVIFLAGCQKNEEQQAAAAAPPPSPVA---VFTTKAEPLPITNELP 60

Query: 62  GVVRAAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQ 121
           G + A + A++  RISG + +   ++G  VK+G +L  +D    +  +++A+  LK  + 
Sbjct: 61  GRITATRIAEVRPRISGIVVERVFEQGTMVKEGDVLYRIDPAPFQVKVDSAEATLKRAQA 120

Query: 122 EYRRAKAIFEKTQAISKAELDKVTNRYD--------------LAKNRVEEAKRKLEYTQI 167
              +AK   ++   + +A++  V  +YD              +A+  + EAK  L+YT +
Sbjct: 121 VVDQAKRTADRQSRLKEAQVTAV-QQYDDAIAALAQAEADVGIAEAGLAEAKLNLQYTNV 179

Query: 168 TAPFDGVISEKTIENFAQVQAN--QVIMILQDLNDLEV--------AIEIPHRVMLSGVR 217
           TAP  G I    I   A V  N  Q +  +Q L+ +           I +   +      
Sbjct: 180 TAPISGRIGRALITEGALVNTNDPQNLATIQQLDPIYADFTQSATDLIRLRKALKDGQWM 239

Query: 218 NTRAIAELSAIPNQ--QFDLKLRTYSTQPSSDSQTYSVVLGFE-DLKGFRVMPGMSAKVI 274
           + +  AE+  I +    + LK R   ++ + D+ T  V L  E       ++PGM  +V 
Sbjct: 240 SAKNEAEVQLILDDGTPYALKGRLLFSEAAVDATTGQVTLRGEFPNPNNDLLPGMYVRV- 298

Query: 275 PVADKPADENTLITLPLTALVPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHL 334
               +   E   IT+P  A+  +N G+  V+VVNA N+ E R V +G T  +R  +T  L
Sbjct: 299 --QIQQGLEKDAITVPQQAVQRNNAGQSQVYVVNADNKVEFRNVTLGRTVGERWQVTSGL 356

Query: 335 KPGEQVIIAGVSSVREGMTVRP 356
           KPGE+VI+ G   V  G  V+P
Sbjct: 357 KPGEKVIVEGFQKVGPGAPVQP 378