Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., efflux protein from Sinorhizobium meliloti 1021

 Score =  105 bits (261), Expect = 3e-27
 Identities = 91/356 (25%), Positives = 170/356 (47%), Gaps = 24/356 (6%)

Query: 15  LLSAVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAF 74
           LL+A++  A+L +GC +  ++     +    + EI A+    +L ++G VRA    +L F
Sbjct: 15  LLTAILLGAVL-SGCSQE-KVETKETIRPVKVVEIAAAGEPRELHYSGSVRARTEMNLGF 72

Query: 75  RISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYR-------RAK 127
           R+ G++T+  V  GD+VK G +LA +D+ D + A+ +A+  L   E++ +       RA+
Sbjct: 73  RVGGKITERLVNIGDRVKPGDILARIDATDYRLAVTSAEANLLAAEKQVQTTALAKLRAE 132

Query: 128 AIFEKTQAISKAELDKVTNRY-------DLAKNRVEEAKRKLEYTQITAPFDGVISEKTI 180
            +F K+ + S+A+LD+ T  Y       D A + + +AK ++ YT + A  +G+++    
Sbjct: 133 QLFTKSFS-SQAQLDQATLLYDQAVSTRDAAASSLSQAKNQVSYTDLKADQNGIVTAVNA 191

Query: 181 ENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTY 240
           +    V     ++ +    + EV I +P   +              +      D  +R  
Sbjct: 192 DIGQVVGTGTPVVTVAVDGEKEVEIAVPEIDVTEFKPGKPVGVRFWSNDMLVLDGHVREV 251

Query: 241 STQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQG 300
           S      S+T+SV +   + +  RV+ GM+A V   A   A    L+++PL+AL     G
Sbjct: 252 SGSADQRSRTFSVRVSLPNDE--RVLLGMTATVEAAA---ASSAPLVSIPLSAL-SKKDG 305

Query: 301 KQFVWVVNAQ-NQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVR 355
           +  VW+V+   +    R + +     + V +   L  G+ V+ AG   + E + VR
Sbjct: 306 QNIVWIVDRDFSTVHARPIKLADFADNGVRVVDGLGAGDLVVAAGTQFMAEDLKVR 361