Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., HlyD family-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  107 bits (268), Expect = 4e-28
 Identities = 75/321 (23%), Positives = 153/321 (47%), Gaps = 11/321 (3%)

Query: 38  PAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAFRISGRLTDIAVKEGDQVKKGQLL 97
           P PV    +T++   +   ++   G   A +   +  +++   T +   +GD V+ GQLL
Sbjct: 32  PRPVPNVVVTKVATQEVRDEVEALGTTHANESVTITAKVTDVATKVNFSDGDIVRAGQLL 91

Query: 98  ASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQAISKAELDKVTNRYDLAKNRVEE 157
             L   + +  ++ A++++ + ++E+ R +++   +Q +++ E D++    D ++  +E+
Sbjct: 92  VQLQDAEQRARVQVAKVKVIDNQREFDRIRSLV-TSQTVAELERDRLQTLIDTSRAELEQ 150

Query: 158 AKRKLEYTQITAPFDGVISEKTIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVR 217
           A+  L    ITAPF G +  + +   A V     +  L D++ +++   +P R +     
Sbjct: 151 AESALRDRAITAPFAGRLGLRQVSPGALVTPGTAVTTLDDISTIKLDFAVPERFLPQLHP 210

Query: 218 NTRAIAELSAIPNQQFDLKLRTYSTQ--PSSDSQTYSVVLGFEDLKGFRVMPGMSAKVIP 275
                A+  A   Q F  K+ +  ++  PS+ + T    +   D K   ++PGM  K+  
Sbjct: 211 GKAVEAQAVAYEGQLFTGKVTSIDSRVNPSTRAVTVRAEIPNPDAK---LLPGMLMKIRL 267

Query: 276 VADKPADENTLITLPLTALVPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLK 335
           +          I +P +A++P  Q + +V++V A N+ ++R V IG   +    I   L 
Sbjct: 268 I----KTSREAIMVPESAIIP-LQNRHYVYMVGADNKVDRREVTIGLRKRGWAEIVDGLA 322

Query: 336 PGEQVIIAGVSSVREGMTVRP 356
            GE ++I G+  VR G  V P
Sbjct: 323 LGETIMIRGILKVRPGDQVTP 343