Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., acriflavin resistance periplasmic protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  275 bits (702), Expect = 2e-78
 Identities = 141/351 (40%), Positives = 221/351 (62%), Gaps = 4/351 (1%)

Query: 9   MAAKRSLLSAVIASALL--LAGCGEAP-QISAPAPVVKPALTEIVASQRASDLTFNGVVR 65
           M  ++    A++ SAL   L GC +AP ++ A   + +PA+   +  Q  S   F GVVR
Sbjct: 1   MTLRQHYRHALVFSALTIGLLGCEQAPVEVKATGDISRPAMIVTLQPQGISQTQFTGVVR 60

Query: 66  AAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRR 125
           +A+RA+LAF+ SG+L  + V+EGD+V +GQ LA+LD  + KTAL +A +E K  + ++ R
Sbjct: 61  SAERAELAFKQSGKLASMTVQEGDKVSRGQTLATLDDAELKTALNSANVEFKQAQTDFDR 120

Query: 126 AKAIFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQ 185
              IF  +QAIS+++LD++  + DLA N+V +A++ L    + APFDG +++K + NFA 
Sbjct: 121 GNKIFSTSQAISRSDLDQLKVKRDLAANKVAKAQQDLANASLNAPFDGTVAQKLVNNFAT 180

Query: 186 VQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPS 245
           VQ NQ + ++ +  +LEV I +P ++ L      RA+AE+  +  Q+F L  R Y+    
Sbjct: 181 VQPNQPVYVVHNPANLEVMINVPGKLFLEPNAGQRAVAEIEGLAGQRFGLTYRYYAADAD 240

Query: 246 SDSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVW 305
             SQTY VVLGF+D     ++PGMSAKV PV D  A +N  + +P+ A+VP N G QFVW
Sbjct: 241 PVSQTYQVVLGFDDPSAANLLPGMSAKVYPVMDSAA-QNQHLLVPVDAVVPSNTGSQFVW 299

Query: 306 VVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRP 356
           +VNA +   KR + +G    +++ +T+ L PG+++++AGV ++ EGM V P
Sbjct: 300 LVNADSSVAKRSIRVGNILGNQIQVTEGLSPGDKIVVAGVHALAEGMKVHP 350