Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., HlyD family secretion protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  106 bits (265), Expect = 8e-28
 Identities = 88/352 (25%), Positives = 168/352 (47%), Gaps = 9/352 (2%)

Query: 9   MAAKRSL-LSAVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASDL-TFNGVVRA 66
           M A++S  L+  +    +LA CG+            P  T++V     S   +    + A
Sbjct: 1   MEARKSFKLALPLLLVGVLAACGQEEAKKEEEKYAIPVETQLVVQGNVSSFYSTTATLEA 60

Query: 67  AQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRA 126
              A +  RI+G +  + V+EGD+VK+GQLLA +D++  +  L+ ++ E+   EQE  R 
Sbjct: 61  PVEAHVVTRIAGLIEALHVEEGDRVKQGQLLAVIDAKRQQYELDRSEAEVLIIEQELARV 120

Query: 127 KAIFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQV 186
           K +  K   +S   + K+      AK R++ AK +++ +QI +P DG+I+++ ++     
Sbjct: 121 KKMKSK-DYVSADSIAKLEYNLQAAKARLDLAKLQVKESQIVSPVDGIIAKRFVKAGNMA 179

Query: 187 QANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSS 246
           +  + +  + + ++L   + +P + + S      A    S   NQ  + ++   S    +
Sbjct: 180 KEFEELFYVVNQDELHGIVHLPEQQLSSLRLGQHADIYASGQKNQAVNAEVLRISPVVDA 239

Query: 247 DSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWV 306
            S T+ V L   +  G  +  GM  +V    D       +IT+P  A++ +   KQ ++V
Sbjct: 240 QSGTFKVTLKVPNQNGI-LKSGMFTRVELKYD---THENVITVPYNAII-NQDNKQTLYV 294

Query: 307 VNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRPYT 358
           V     AE+R V++G    + V +   + PGE ++I G  ++++   V   T
Sbjct: 295 VQ-DTTAERREVELGYREGNMVEVVAGIAPGEHLVIRGQQNLKDQSLVEIIT 345