Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 358 a.a., periplasmic linker protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  131 bits (330), Expect = 2e-35
 Identities = 96/346 (27%), Positives = 169/346 (48%), Gaps = 20/346 (5%)

Query: 24  LLLAGCGEAPQIS-APAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAFRISGRLTD 82
           +LL  C +AP I   PA V   A+  I +++      F+GV RA     LAFR+ GR+  
Sbjct: 13  VLLGSCRQAPDIEHTPARV---AVYTIPSTENQVTRVFSGVARAQDLTALAFRVEGRIAR 69

Query: 83  IAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQAISKAELD 142
           I V +G +VK G +LA L+  D + AL   +  L  T ++  R+K + ++ Q +++AE D
Sbjct: 70  IPVTKGQRVKAGDVLAVLEKNDFQIALNDRRARLDVTRKQAERSKTLVDQ-QLMAQAEYD 128

Query: 143 KVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQVIMILQDLNDLE 202
           ++   Y +A+    +A+  LEYT++ APFDG+I +  +++F  VQ   +++ +     +E
Sbjct: 129 QMNAEYLVARAEARQAELMLEYTKLKAPFDGLIGDVFLKSFENVQPGTLVLSVHRTERIE 188

Query: 203 VAIEIPHRVML------SGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDSQTYSVVLG 256
           V +++P  ++       +G +         A P++ F   L   +T+    S TY   + 
Sbjct: 189 VDVQVPDLLIAVSRRAETGQQKQGFDVAFEAFPDKSFIGHLLEVNTEKDPQSHTYVATVA 248

Query: 257 FEDLKGFRVMPGMSAKV-IPVADKPADENTLITLPLTALVPDNQGKQF------VWVVNA 309
            E  +G +V+ GM AKV + +            LP++A+V    G         VW+ ++
Sbjct: 249 VELPEGVKVLEGMPAKVTVDLGKATYTYRREYLLPISAVVM-RDGSDIDLQDAGVWLYDS 307

Query: 310 QNQAEK-RYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTV 354
                K + V +G      + +   L  G+QV+  G S + +G  V
Sbjct: 308 ATGTVKFKPVRLGVIVGQSIEVVDGLADGQQVVTQGASRLVDGQQV 353