Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., multidrug resistance protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  127 bits (318), Expect = 6e-34
 Identities = 96/357 (26%), Positives = 180/357 (50%), Gaps = 28/357 (7%)

Query: 18  AVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAFRIS 77
           A +    LL+   +     AP PV    +++I  +   +       VRA++RA L+FR+S
Sbjct: 13  AAVLGGFLLSSATQGIAGEAPRPV---KVSQIALADNMNQRLLPAEVRASERAGLSFRVS 69

Query: 78  GRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQAIS 137
           G + DI V+ G++VK GQLLA LD    +  L  A+ +    +  Y R  ++ E+   +S
Sbjct: 70  GEIMDILVRPGEEVKAGQLLAKLDPALYEQQLAVAKAQYALAKVLYERNLSLVEQG-VVS 128

Query: 138 KAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQVIMILQD 197
           + + DK  + +D+AK  +++A+ +L YT++ AP+DGVIS++    F  V+A + ++ ++ 
Sbjct: 129 RNDFDKSKSNHDVAKAALDKAEVELAYTRLLAPYDGVISKRDKRQFEYVRAQEPVLSVRS 188

Query: 198 LNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLK-------LRTYSTQPSSDSQT 250
            N ++V  ++P +  +S +++ +A      +P  +FD +       L+  ST   S + +
Sbjct: 189 ENLIDVNFQLPEQ-YISPIQSYQANTGKILVPEVRFDSRDSWFAASLKEMSTVADSSTGS 247

Query: 251 YSVVLGFEDLKGFRVMPGMSAKV---IPVADK-PADENTLITLPLTALVPD-NQGKQFVW 305
           Y+V+L     +   ++PGMSA V   +P     P  E     +P  A+V + ++   F W
Sbjct: 248 YTVILTLPMPEQLNILPGMSATVRVSLPTETPIPPPE-----IPAGAVVQEGDKTWVFRW 302

Query: 306 VVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRPYTDNNG 362
           +  +Q   +   V  G       V+   L  G+ V++AG   +++G +   +    G
Sbjct: 303 LPESQLLQKVEVVLEGH------VLVSGLNDGDFVVVAGADELKDGQSAVRWVKERG 353