Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., efflux RND transporter periplasmic adaptor subunit from Rhodopseudomonas palustris CGA009

 Score =  100 bits (249), Expect = 7e-26
 Identities = 93/337 (27%), Positives = 151/337 (44%), Gaps = 29/337 (8%)

Query: 38  PAPV---VKPALTEIVASQRASDLTFNGVVRAAQRADLAFRISGRLTDIAVKEGDQVKKG 94
           P P+   V  A TE++ +     LT  G + A  + ++   +SGR+TDI  + G +VK+G
Sbjct: 63  PPPITVTVAEAKTEVLPNL----LTAVGDLAAVHQVNVTSDVSGRITDILFQAGSEVKQG 118

Query: 95  QLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQAISKAELDKVTNRYDLAKNR 154
            LL  L     +  L   + + K  E    RAK +  + Q   +A +D     YD A   
Sbjct: 119 TLLVKLFDETEQADLANYRAQAKVAELSLDRAKQLAAR-QFGPQATVDSAQAAYDQANAG 177

Query: 155 VEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLS 214
           + + +  +   ++ APFDGV+  + +E    + A   I+ L DL+ +   I +  +   +
Sbjct: 178 IAKTEALISQKKVRAPFDGVLGVRHVEVGQYLSAGTQIVTLTDLSQVYANITVTEKDSGT 237

Query: 215 GVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKVI 274
                    ++ A P + FD K+ T   Q SSD++   V     D  G  + PGM A  I
Sbjct: 238 LAVGQAVRLKVDAYPGRVFDGKITTIEPQISSDTRNIRVQATL-DNPGHVLRPGMFATTI 296

Query: 275 PV-ADKPADENTLITLPLTA-----------LVPDNQGKQFVWVVNAQNQAEKRYVDIGT 322
            V  DKPA    ++T+P TA           L+ + +G+       A+  A + +V  G 
Sbjct: 297 VVLPDKPA----VVTVPETAVDYTLYGDSVFLIKEEKGED----GKAKLSAVRTFVRTGD 348

Query: 323 TYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRPYTD 359
               R VI   LK G++V+  G   ++ G  V   TD
Sbjct: 349 RIDGRTVIQTGLKAGDRVVAVGQLKLQSGAAVAISTD 385