Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 371 a.a., efflux RND transporter periplasmic adaptor subunit from Rhodopseudomonas palustris CGA009

 Score =  124 bits (312), Expect = 3e-33
 Identities = 113/369 (30%), Positives = 177/369 (47%), Gaps = 46/369 (12%)

Query: 17  SAVIASALLLAGC----------GEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRA 66
           SA+IA AL+L GC          G+ P+ + P  VV     E      A   TF   +R 
Sbjct: 9   SAIIAMALILGGCDSATPKPDRGGKEPRKAQPVMVVPVRFEE-----GARTRTFAATIRP 63

Query: 67  AQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRA 126
           +  +DL FRISG++    V+ GD V+ GQ L +LD+ D +   E A+ E+K  +    +A
Sbjct: 64  SIESDLGFRISGKVARRLVRTGDLVRSGQALLTLDTNDLRLQREQAEAEVKAAQSNLIQA 123

Query: 127 KA------IFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLE-------YTQITAPFDG 173
           +A        +    ++ A L K     + A++R+  A+R L+       Y  + A  DG
Sbjct: 124 EADEGRAVELQSKGWMANAALQKAHATAEEARSRLIRAQRALDLAGHALGYATLEADADG 183

Query: 174 VISEKTIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELS--AIPNQ 231
           VI+   IE    + A Q  + L  L++LE  + +P   +    R  RA A LS  ++P +
Sbjct: 184 VITATPIEPGQVISAGQAAVRLARLSELEAVVALPESYV---ERVGRASASLSLWSLPGK 240

Query: 232 QFDLKLRTYSTQPSSDSQTYS---VVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLIT 288
            +D +LR  S      ++T++   V+ G +D    +V  GMSA    +  +  DE     
Sbjct: 241 TYDARLRELSFAADLATRTFAARFVIPGADD----KVRIGMSA---TLTLREQDERRFAR 293

Query: 289 LPLTALVPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDR-VVITQHLKPGEQVIIAGVSS 347
           LPLTA+    +G   V+VV    +  +R V I   Y+DR V++T  +  GE V+  GV  
Sbjct: 294 LPLTAVYNHGRGAA-VFVVGDGGELHERPVTI-ERYEDRNVLVTSGVSDGETVVALGVEK 351

Query: 348 VREGMTVRP 356
           +   +TVRP
Sbjct: 352 LDPALTVRP 360