Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., efflux RND transporter periplasmic adaptor subunit from Rhodopseudomonas palustris CGA009

 Score =  110 bits (276), Expect = 4e-29
 Identities = 98/355 (27%), Positives = 165/355 (46%), Gaps = 29/355 (8%)

Query: 18  AVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAFRIS 77
           AVIA+ALLL GC +  +   P   V+P ++ ++A  +A++L   G V    + D  FR+ 
Sbjct: 8   AVIAAALLLTGCNDKSETKPP---VRPVMSTVIAPLQATNLAVVGTVEPQFKTDYGFRML 64

Query: 78  GRLTDIAVKEGDQVKKGQLLASLDS-------RDAKTALEAAQLELKNTEQEYRRAKAIF 130
           GRL    V  GD V+KGQ LA++D        R A+  L  AQ +L N      R +A+ 
Sbjct: 65  GRLIARPVNIGDVVEKGQTLAAVDPFAAELAVRSAQADLATAQAQLVNASGTANRQRALI 124

Query: 131 EKTQAISKAELDKVTN-------RYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENF 183
           E T A +KA LD               A++ + +A+ +L YT+I A + GV++    +  
Sbjct: 125 E-TGATTKATLDSAEQGDAAAQAAVVRAQSALTKAREQLSYTKIEAQYAGVVTAVGAQVG 183

Query: 184 AQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQ 243
             V   Q++  +   +  E  I++   ++            L   P  + D K+R  + Q
Sbjct: 184 QVVNPGQMVATVARPDIREAVIDVAEDLVSVLKIGAPLTVALQLDPRVRVDGKVREIAPQ 243

Query: 244 PSSDSQTYSVVLGFED-LKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQ 302
               ++   V +  E+  + FR+   ++  +      P   +    LP TA++   QG Q
Sbjct: 244 ADQVTRARRVRITLENPPETFRLGTTITTLI------PGKPSRGFRLPATAIL--RQGDQ 295

Query: 303 -FVWVVN-AQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVR 355
             VWV++ A+    KR V +  +      +T  L+ G +++ AGV  ++EG  VR
Sbjct: 296 ASVWVIDTAKGSVSKRNVQVAPSDNGTAQVTDGLEAGMRIVTAGVHHLQEGQMVR 350