Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Pseudomonas sp. BP01

 Score =  137 bits (345), Expect = 5e-37
 Identities = 106/357 (29%), Positives = 170/357 (47%), Gaps = 30/357 (8%)

Query: 22  SALLLAGCGEA---PQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAFRISG 78
           +ALLL  CG+    P    PA VV+P   E  A       ++ G VRA    DLAFRI G
Sbjct: 14  AALLLTACGQEATPPAAPRPALVVQPQPAEAAAD------SYPGEVRARFEPDLAFRIGG 67

Query: 79  RLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEK------ 132
           ++T   V+EG +VK  Q LA LD +D +  LEA + ++   E      +A  ++      
Sbjct: 68  KVTKRLVEEGQRVKADQPLAELDPQDVRLQLEANRAQMAAAEANLALVRAERDRYQKLLD 127

Query: 133 TQAISKAELDKVTNRYDLAKNRVEEAK-------RKLEYTQITAPFDGVISEKTIENFAQ 185
            Q +S ++ D   N Y     R+++AK        + EY  + AP  GV++++ +E    
Sbjct: 128 RQMVSHSQFDNAENLYRAGLARLKQAKAEFDVAGNQAEYAVLRAPQAGVVAKRQVEVGQV 187

Query: 186 VQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPS 245
           V A Q +  L    + EV I +P +             EL + P ++F  ++R  S    
Sbjct: 188 VAAGQTVFTLAADGEREVVIGLPEQQFARFAVGQPVSVELWSHPQERFQGRIRELSPAAD 247

Query: 246 SDSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTL-ITLPLTALVPDNQGKQFV 304
             S+T++  + F        + G SA+V       A E  + + +PL+A+  +N G+ +V
Sbjct: 248 PRSRTFAARIAFTSTATPAEL-GQSARVF-----IAHEGLIPLAVPLSAVTAEN-GQAYV 300

Query: 305 WVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRPYTDNN 361
           W VN  ++ E+  V +G    D V + + L PG+ V+ AG   +REG  +RP   +N
Sbjct: 301 WRVNKDSRLERAVVRLGAYGSDSVPVLEGLAPGDWVVAAGGHVLREGQEIRPVDRSN 357