Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 376 a.a., efflux RND transporter periplasmic adaptor subunit from Pseudomonas fluorescens SBW25-INTG

 Score =  110 bits (274), Expect = 8e-29
 Identities = 94/368 (25%), Positives = 156/368 (42%), Gaps = 26/368 (7%)

Query: 15  LLSAVIASALLLAGCG------EAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQ 68
           +L  V+   LLLAG        +    S P P V  A+           L   G ++A Q
Sbjct: 9   MLGVVLLIVLLLAGYKAFSIYQQIQVFSKPKPPVSVAVATATEQPWQLRLPSVGTLKALQ 68

Query: 69  RADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKA 128
             +L+  ++G + D+    G +VK GQ L  LDS      LE AQ +L   + +Y R   
Sbjct: 69  GVNLSLEVAGTVKDVQFASGQKVKAGQPLVQLDSAVESALLETAQADLGLAQLDYGRGSQ 128

Query: 129 IFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQA 188
           +   +QAISK E D+++ +    K  V + K  L    I APF G I  + ++    + +
Sbjct: 129 LVG-SQAISKGEFDRLSAQLQKNKATVNQLKASLAKKHIVAPFSGTIGIRQVDVGDYLAS 187

Query: 189 NQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDS 248
             VI  LQD++ L V   IP   +            +SA P + F   +   + +  + +
Sbjct: 188 GTVIATLQDISSLYVDFYIPEHSVPKVALGQAVQVAVSAYPGEPFPGSVSAINPKVENST 247

Query: 249 QTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVN 308
           +   V     + +G +++PGM   +  +   PA +   I +P +A+     G     V  
Sbjct: 248 RNVLVRATLANPEG-KLLPGMFTSLDVLLPNPAAQ---IVVPESAITYTLYGNSVYAVAE 303

Query: 309 AQNQ---------------AEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMT 353
            + +               AE+R+V+ G      V++++ LK GEQV+ AG   +  G  
Sbjct: 304 KKTEGGEVEKDADGKPLLIAERRFVETGERRGGLVLVSKGLKAGEQVVSAGQLKLDNGTP 363

Query: 354 VRPYTDNN 361
           +    D N
Sbjct: 364 IAISPDKN 371