Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 347 a.a., putative secretion protein from Phaeobacter inhibens DSM 17395

 Score =  124 bits (312), Expect = 3e-33
 Identities = 94/352 (26%), Positives = 168/352 (47%), Gaps = 19/352 (5%)

Query: 14  SLLSAVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRAS-DLTFNGVVRAAQRADL 72
           SL +    +AL+L G    P ++A   V+KP    +  S        F G V A +  DL
Sbjct: 4   SLRAIAGIAALMLVG---VPALAAD--VLKPVKLMVTQSGAMPIHREFYGQVAAKETVDL 58

Query: 73  AFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEK 132
           AF++ G++    V EG  V KG L+A LD    +  L  AQL+ +  ++   R + +   
Sbjct: 59  AFQVGGQVVKFPVTEGAFVPKGALVAELDLEPFELKLGQAQLQKEQADRTVTRLEKL--- 115

Query: 133 TQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQVI 192
           T  +S+  +D    +  L++  + +A   LE+  + APFD ++S + +  F+ V A   +
Sbjct: 116 TGTVSQVSIDDAETQAGLSRIALRDADYALEHATLNAPFDALVSSREVALFSTVSAGAPV 175

Query: 193 MILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQ--FDLKLRTYSTQPSSDSQT 250
           + L D+++L + +++P  +   G  N  A+   +  P     + L++  +  + SS  QT
Sbjct: 176 VRLHDMSELHIEVDVPEVLFQQGEDND-ALTITATFPGSDTAYPLEILEFDAEASSVGQT 234

Query: 251 YSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVNAQ 310
           Y V    +  K  ++ PG S  V    D  A   + I +P TA+VP   G+  V + + +
Sbjct: 235 YRVTFRLDPPKDRQIFPGASTTVRVTVDTGA---SAIVVPPTAIVPAANGETGVMLFSPK 291

Query: 311 NQAEKRY----VDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRPYT 358
              E       V+   T   ++ IT  L+ GE++++ G  ++ +G  VR +T
Sbjct: 292 GGDEGTVTWTKVETAATDGGQIEITSGLQGGEEIVLTGGGALADGEAVRRFT 343