Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., efflux transporter periplasmic adaptor subunit from Pedobacter sp. GW460-11-11-14-LB5

 Score = 94.0 bits (232), Expect = 6e-24
 Identities = 95/364 (26%), Positives = 163/364 (44%), Gaps = 29/364 (7%)

Query: 15  LLSAVIASALLLAGCGEAPQISAPAPVVKPALT--EIVASQRASDLTFNGVVRAAQRADL 72
           LLS        + GCG +     P    + A+   ++   + ++ L+  G + A Q+ DL
Sbjct: 10  LLSTGFLVLTAIYGCGHSESKVTPRKEKEAAIATFDLKKEKLSTKLSLPGELIALQQVDL 69

Query: 73  AFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEK 132
             ++S  +  + V  G +V KGQLL +L++ +  + L A Q  +K  E  Y  +KA + +
Sbjct: 70  YAKVSSFVKTLKVDIGSEVSKGQLLMTLEAPEMTSQLAATQSRIKAQEAIYTASKANYNR 129

Query: 133 TQAISKAELDKVTNRYD--------------LAKNRVEEAKRKLEYTQITAPFDGVISEK 178
               SK      TN  D               AK   +E     +Y  I APF G+IS +
Sbjct: 130 LYETSKTPGTISTNDLDQAMAKKNADLAQLEAAKAAYKEVGSVQDYLTIRAPFSGIISAR 189

Query: 179 TIENFAQV-----QANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQF 233
            +   A V      ++  +  LQD  +L +A+ IP                + ++P+Q F
Sbjct: 190 NVNLGAYVGPTGKGSDLPLFTLQDQKNLRLAVSIPEVYTGYLKAGDEISFTVKSLPSQTF 249

Query: 234 DLKLRTYSTQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKV-IPVADKPADENTLITLPLT 292
             K++  S       ++  + +   ++    ++PGM A+V IP+   PA+ +T I +   
Sbjct: 250 KAKVKRLSGALDLRLRSERIEMDVPNVDKI-LLPGMVAEVNIPL---PANASTFI-ISKK 304

Query: 293 ALVPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGM 352
           AL+  ++G  FV  V A N+A K  V  G    D+V I   L  G++++      + EGM
Sbjct: 305 ALLDTSEG-LFVLKV-ADNKAVKVGVKKGRETDDQVEIFGDLTEGDKLVAEPTEEMHEGM 362

Query: 353 TVRP 356
           T++P
Sbjct: 363 TIKP 366