Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  114 bits (286), Expect = 3e-30
 Identities = 89/345 (25%), Positives = 162/345 (46%), Gaps = 15/345 (4%)

Query: 19  VIASALLLAGCGE---APQISAP-APVVKPALTEIVASQRASDLTFN----GVVRAAQRA 70
           +I S LL AG        Q   P  P  +P    +VA      +       G  +A +  
Sbjct: 5   IIISMLLAAGAATYYFTQQTETPKGPRGRPTPNVVVAKAEMQPIRDEVEALGTGKANESI 64

Query: 71  DLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIF 130
            +  +++  +T+I   +G  V KGQLL  L  R+    +  A++++K+ E+E  R  ++ 
Sbjct: 65  TVTPKVTDMVTEINFNDGQMVDKGQLLVRLQDREQIARVTVARVKMKDHERELARISSLV 124

Query: 131 EKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQ 190
             +Q ++  E D++    D AK  +++A+  L+  +I APF G +  + +   + V    
Sbjct: 125 T-SQTVAALERDRLQTLIDTAKAELDQAESSLKDRRILAPFSGRLGLRQVSQGSLVTPGT 183

Query: 191 VIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDSQT 250
           VI  L D++ +++   +P R + S        A   A   + F  K+ +  ++ +  ++ 
Sbjct: 184 VITTLDDISTIKLDFSVPERFLQSLAIGKSVEASAVAFEGELFTGKVVSVDSRINPTTRA 243

Query: 251 YSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVNAQ 310
            +V     + KG R++PGM  KV  +          + +P  A++P  Q   FV++VN +
Sbjct: 244 VTVRAEIPN-KGMRLLPGMLMKVKLI----KQSREALIIPEAAIIP-IQKDHFVYLVNDE 297

Query: 311 NQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVR 355
           N  E+R V +G   +  V I   +  GEQV++ G+  VR G TV+
Sbjct: 298 NVVERRQVQLGLRKRGWVEIVGGVDVGEQVMVRGILKVRPGDTVK 342