Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  100 bits (250), Expect = 5e-26
 Identities = 85/329 (25%), Positives = 160/329 (48%), Gaps = 12/329 (3%)

Query: 25  LLAGCG-EAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAFRISGRLTDI 83
           +L+ CG E  +       V    T ++    +S  +    + A Q AD+  RI+G +  I
Sbjct: 18  VLSACGNEETKKEEEKYAVPVETTTVIQGDVSSFYSTTATLEAPQEADVVSRIAGLIESI 77

Query: 84  AVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQAISKAELDK 143
            V+EGD+V KGQLLA +D++  +  L  +Q E++  EQE  R K +  K + IS   + K
Sbjct: 78  KVEEGDRVSKGQLLAVIDAKRQRYDLARSQAEVEIIEQELNRLKKMSNK-EFISADSMAK 136

Query: 144 VTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQVIMILQDLNDLEV 203
           +      A  + + A  +++ + + +P DGV++++ ++     +  + +  + + ++L  
Sbjct: 137 LEYNLQAAIAKRDLAALQVQESMVRSPIDGVVAKRYVKAGNMAKEFEQLFYVVNQDELYG 196

Query: 204 AIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDSQ--TYSVVLGFEDLK 261
            + +P    L  +R  +  AEL A  + +  +  +     P  D Q  T+ V L   + +
Sbjct: 197 IVHLP-EAQLQSLRLGQE-AELYANKHTKDTIHAKVLRISPIVDPQSGTFKVTLSVPN-Q 253

Query: 262 GFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVNAQNQAEKRYVDIG 321
             ++  GM  +V    D     + +IT+P  A+V  NQ  Q+   V   + A +R V +G
Sbjct: 254 NAQLKAGMFTRVELRYD---THSNVITVPYNAVV--NQDNQYALYVVQGDNALRREVALG 308

Query: 322 TTYKDRVVITQHLKPGEQVIIAGVSSVRE 350
               D V +   L+PGEQ++I G  ++++
Sbjct: 309 YREADTVEVVSGLEPGEQIVIRGQQNLKD 337