Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 417 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  116 bits (291), Expect = 1e-30
 Identities = 87/324 (26%), Positives = 160/324 (49%), Gaps = 15/324 (4%)

Query: 35  ISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAFRISGRLTDIAVKEGDQVKKG 94
           + A A  V  A   + A + A  L+  G + A +   +A  +SG++  I + +   V +G
Sbjct: 57  VKAGARAVPIASARVEAHEVAQHLSLVGKLAANRSVQIAAEVSGKVQAINLSDNQAVSQG 116

Query: 95  QLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQAISKAELDKVTNRYDLAKNR 154
           Q+L  L+   AK  L  A+  L +  ++    K +  K  AI++ E+D      D+A+ R
Sbjct: 117 QVLVHLEDAKAKANLAEAKAYLNDERRKLGEYKRLI-KQHAITQTEIDAQLASVDIAEAR 175

Query: 155 VEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLS 214
           ++ A+  L+Y  + APFDGVI          V     ++ L DL+ + + ++IP R +  
Sbjct: 176 LQAAQADLDYHTLKAPFDGVIGLVDFSLGKLVSVGSELVSLDDLSSMRLDLQIPERYLSQ 235

Query: 215 GVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDSQTYSVVLGFEDLKGFRVMPGM--SAK 272
                  +A  SA P +QF  ++   + + +S++    V + F D    ++ PGM  SA+
Sbjct: 236 IYLGMPVVASSSAWPGEQFHGQVVAMAPRINSETLNLKVRVNF-DNPSLQLRPGMLISAR 294

Query: 273 V--IPVADKPADENTLITLPLTALVPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVI 330
           +   PV        T   +P+ AL      K+FV+V+++ N A +  V +G    D+V+I
Sbjct: 295 LDFAPV--------TQAVVPVQALEYSGT-KRFVYVIDSDNIARRTQVTLGARIDDQVLI 345

Query: 331 TQHLKPGEQVIIAGVSSVREGMTV 354
              L  G+++++ G+ ++R+G+ V
Sbjct: 346 DDGLSLGDRIVVKGLVNMRDGIKV 369