Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  167 bits (423), Expect = 4e-46
 Identities = 108/347 (31%), Positives = 181/347 (52%), Gaps = 10/347 (2%)

Query: 18  AVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAFRIS 77
           +++   L+LAGC       AP  V    L EI      +  +F   V A ++A+L+FR+S
Sbjct: 9   SLLVLTLVLAGCSTESAEIAPESVRPVKLLEITELGSGTLRSFPAKVAATKQAELSFRLS 68

Query: 78  GRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQAIS 137
           G+L + ++ +G +V KG++LA LD RDA+  L   + + +  + ++ R K    +   IS
Sbjct: 69  GQLIEFSLVDGQRVTKGEVLARLDDRDARNQLLNREADHELAQADFNR-KGELLRQALIS 127

Query: 138 KAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQVIMILQD 197
           +AE D    +   +   +  A+ +L YT I APF G +++  IENF  VQANQ +++LQ 
Sbjct: 128 QAEYDLAKAQLKSSAANLASAQDQLSYTVIKAPFSGTVAKTKIENFQIVQANQPVLVLQK 187

Query: 198 LNDLEVAIEIPHRVMLSGVRN------TRAIAELSAIPNQQFDLKLRTYSTQPSSDSQTY 251
              ++V I++P   + S V +      +  +   S  P QQ+  +L+ ++TQ +  +Q+Y
Sbjct: 188 DRFIDVVIQVPES-LASRVTSFNPHSPSLPMVTFSNHPEQQYAARLKEFATQVTPGTQSY 246

Query: 252 SVVLGFEDLKGFRVMPGMSAK-VIPVADKPADENTLITLPLTALVPDNQGKQFVWVVN-A 309
            VV        F V+PGMSA+ ++ +A   A + + I  P   L  D  G+  VW  +  
Sbjct: 247 EVVFTLPTPTEFSVLPGMSAQLILDIAGPDAKKKSAIVPPSAVLKRDQDGEPIVWTYDLG 306

Query: 310 QNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRP 356
             Q   R V +G      + ITQ L  G++V++AGV+ + E   V+P
Sbjct: 307 TGQVSARKVSLGKVTSQGIEITQGLTVGDRVVVAGVAQLHESQQVKP 353