Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 386 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  105 bits (261), Expect = 3e-27
 Identities = 101/369 (27%), Positives = 167/369 (45%), Gaps = 35/369 (9%)

Query: 16  LSAVIASALLLAGCG--EAPQISAPAP-VVKPALTEIVASQRASDLTFNGVVRAAQRADL 72
           ++++++ AL + GCG  E    SA AP  ++  + ++V   +A  +   G  +A   A++
Sbjct: 7   IASLVSVALWITGCGQDENQGHSAAAPRSMEVGVVQVVEQPQAIQVELPGRSKAYLEAEV 66

Query: 73  AFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKA---- 128
             ++SG +T+    EG +V +GQ L  +DS   K AL +A+ +L         AKA    
Sbjct: 67  RPQVSGIITERGFVEGGEVTEGQSLYQIDSSTYKAALVSAEADLARANASLVSAKAKAAR 126

Query: 129 --IFEKTQAISKAELDKVTNRY-------DLAKNRVEEAKRKLEYTQITAPFDGVISEKT 179
                KT AIS+ + D+    Y        +AK  +  AK  LEYTQ+ AP  G I + +
Sbjct: 127 YKALIKTDAISQQDFDEADALYKEALANVTVAKAAINTAKINLEYTQVKAPISGRIGKSS 186

Query: 180 IENFAQVQANQ--VIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKL 237
           +   A V ANQ   +  +Q L+ + V I       L  ++      +L A  N    L L
Sbjct: 187 VTAGALVTANQSAALATIQQLDPINVDI-AQSSAQLLRLKAKLKQGQLQAADNADVRLIL 245

Query: 238 RTYS----------TQPSSDSQTYSVVL--GFEDLKGFRVMPGMSAKVIPVADKPADENT 285
              +           + S D  T SV L   F +  G  ++PGM  + +  A     +  
Sbjct: 246 EDGTAYEHMGSLRFAEVSVDENTGSVTLRAEFPNPDGV-LLPGMYVRAVLNA---GTDPK 301

Query: 286 LITLPLTALVPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGV 345
            I +P  A+  + +G+    V+ A+++ E R V        +  IT  LK G+Q+I+ G+
Sbjct: 302 AILVPQKAVTRNTKGQAVAMVIGAESKVEPRVVTTAEVIDHQWRITSGLKAGDQLIVEGL 361

Query: 346 SSVREGMTV 354
             +R G  V
Sbjct: 362 QKIRPGAPV 370