Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., RND family efflux transporter, MFP subunit from Dechlorosoma suillum PS

 Score =  100 bits (249), Expect = 6e-26
 Identities = 90/348 (25%), Positives = 161/348 (46%), Gaps = 22/348 (6%)

Query: 13  RSLLSAVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADL 72
           R  LS  ++ A+      EA     P  VV+P        + A  L   GVV A  +A +
Sbjct: 24  RRCLSLALSLAVGSVVAAEASPSELPTRVVQPR-------EVALTLPAEGVVEALSQAVV 76

Query: 73  AFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEK 132
           A +++GR+T++ V  G  VKKG+++  LD R+A      AQ  L N   +Y R++++  +
Sbjct: 77  AAQVAGRVTEMRVDAGQAVKKGEVMLRLDVREAAETAAGAQAALVNARAQYERSRSL-RQ 135

Query: 133 TQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQVI 192
              IS++ LDK     DLA      +     +  ITAP  G+++ + IE        + +
Sbjct: 136 QNFISQSALDKAKADLDLAMANAGASGASQSHGTITAPISGLVARRHIELGEMAAQGRSL 195

Query: 193 MILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDSQTYS 252
           + L D   L V +EIP +  L  ++  + +      P  Q  +     +  P++D+ T++
Sbjct: 196 VTLYDPAGLRVTVEIP-QYRLKELKGGKDLQGRIEFPELQRQVAAAKVTVLPAADAATHT 254

Query: 253 VVLGFE---DLKGFR-VMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVN 308
           V +      D    + V+PGM+A+V  V  +       +T+P +A+V   +    ++V +
Sbjct: 255 VQVRLNLPGDAASLQDVLPGMAARVHFVLGRAVK----LTVPASAVVRRGE-VAGLYVRD 309

Query: 309 AQNQAEKRYVDIGTTYKD-RVVITQHLKPGEQVIIAGVSSVREGMTVR 355
            Q +   R + +G    D  V +   L  GE +++     VR G+ ++
Sbjct: 310 GQGRLSLRQLRLGQAVGDGEVEVLAGLSAGETIVL---DPVRGGIALK 354