Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., RND family efflux transporter, MFP subunit from Dechlorosoma suillum PS

 Score =  146 bits (368), Expect = 1e-39
 Identities = 121/360 (33%), Positives = 181/360 (50%), Gaps = 34/360 (9%)

Query: 21  ASALLLAGCG-EAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAFRISGR 79
           A+A++LA CG EAP+    AP  +PALT++V +   SD+ + G VRA    D  FRI G+
Sbjct: 12  ATAMVLASCGKEAPK----APEPRPALTQVVGAAGQSDMLWVGEVRARYETDQGFRIGGK 67

Query: 80  LTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEK------T 133
           + +  V  G  VKKGQ+LA LD  DA  +  AA  + K  E ++  AKA +E+       
Sbjct: 68  VVERKVDIGAVVKKGQILARLDPVDAGLSAAAANAQTKAAEADFLVAKAEYERQKKLLEK 127

Query: 134 QAISKAELDKVTNRYDLAKNRVEEAK-------RKLEYTQITAPFDGVISEKTIENFAQV 186
           Q IS++  D    ++  A  R+++A+        +  YT + A  DGV+++  +E    V
Sbjct: 128 QFISQSAFDSREAQFKAALARLDQARAQAAVTGNQAGYTDLVAEKDGVVTDVKVEPGQVV 187

Query: 187 QANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSS 246
            A Q  + L    D EV + +P   M      T A+  L A  +Q +  ++R     P++
Sbjct: 188 SAGQPAIRLALAGDKEVVVAVPEGRMKGIEPGTSAVIRLWANQDQSYAARVR--EVAPAA 245

Query: 247 DSQTYSV---VLGFEDLKGFRVMPGMSAKV-IPVADKPADENTLITLPLTALVPDNQGKQ 302
           D+ T S    V   E   G R+  GM+A V I  A+ P        L  TA +    GK 
Sbjct: 246 DAATRSFQVKVTVLEPDAGLRL--GMTAGVLIGSAEAP-------LLVPTAALTRQDGKN 296

Query: 303 FVWVVNAQN-QAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRPYTDNN 361
            VWVVN Q+ + + R V  G   +D VV+ + L  GE+V+IAGV  ++ G  VR    +N
Sbjct: 297 TVWVVNPQSGEVQPRSVTTGPFREDGVVVEKGLARGERVVIAGVHKLQPGQLVRAVEPSN 356