Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., efflux transporter, RND family, MFP subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 95.1 bits (235), Expect = 3e-24
 Identities = 94/372 (25%), Positives = 168/372 (45%), Gaps = 44/372 (11%)

Query: 19  VIASAL---LLAGCGEAPQISAPAPVVKPALTEIVASQRASDLT----FNGVVRAAQRAD 71
           ++ SAL   +LAGC        P P   P +T  VA  R   +     F G +   +  D
Sbjct: 17  ILLSALALPVLAGCDSRNAFVPPPP---PKVT--VAPPRVGPVVEYMEFTGTIAPVESVD 71

Query: 72  LAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELK-------NTEQEYR 124
           +  R++G L     ++G  V+KG  L  ++    + AL+ A+ EL+         E E  
Sbjct: 72  ITARVTGVLRSAQFRDGSMVRKGDPLFLIEPEPFQAALQRAEAELEVQRASLDRAETELA 131

Query: 125 RAKAIFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLE-------YTQITAPFDGVISE 177
           R++ +  + +A S+A++ +   + D +K  +  A  ++E       YT+I APFDG ++ 
Sbjct: 132 RSRKLLSE-KAGSEADVVRWQQQRDSSKAGISRASAQIETARIDLGYTRIVAPFDGQMTR 190

Query: 178 KTIE--NFAQVQANQVIMILQDLNDLEVAIEIPHRVML--------SGVRNT--RAIAEL 225
           + ++  N     A   +  +   + + V   I  R +L        +G   T      EL
Sbjct: 191 RLVDPGNVVGPGAVTKLATIVRRDQVHVYFSINERDLLRLMGDKPRNGKNGTPPELPLEL 250

Query: 226 SAIPNQQFDLKLRTYSTQPSSDSQTYSVVL-GFEDLKGFRVMPGMSAKVIPVADKPADEN 284
           +      F    +     P+ D  T +++L G     G R++PG+ A++     +    +
Sbjct: 251 ALADEDAFPHAGKLEYADPTVDPSTGTLLLRGIFPNTGGRLVPGLYARIRVAMGR---RD 307

Query: 285 TLITLPLTALVPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAG 344
             + +P  AL  D  G  +V V+NAQN AE+R V +G  ++   V+ + L+ G++V++ G
Sbjct: 308 AALLVPERALGQDQSGS-YVMVINAQNVAEQRPVKLGALHEGWRVVEKGLEAGDRVVVNG 366

Query: 345 VSSVREGMTVRP 356
           +   R G  V P
Sbjct: 367 MQRARPGSPVDP 378