Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., efflux transporter, RND family, MFP subunit from Marinobacter adhaerens HP15

 Score =  110 bits (275), Expect = 6e-29
 Identities = 82/325 (25%), Positives = 153/325 (47%), Gaps = 10/325 (3%)

Query: 34  QISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAFRISGRLTDIAVKEGDQVKK 93
           Q+S P P  + +  E         +   G V A     +A  + G +  I  + GD VK+
Sbjct: 35  QMSQPQPPAQISAVEAQNEAWTPAIKAVGSVEAINGIRVANEVPGVIEAINFESGDVVKQ 94

Query: 94  GQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQAISKAELDKVTNRYDLAKN 153
           G +L  +D+   + AL   + E +  EQE++R   +  K +A+S+++ D+    +D A+ 
Sbjct: 95  GDVLIRIDAAIDEAALRTRRAEAQLAEQEFKRVSDLLPK-RAVSQSQYDEAKANFDAARA 153

Query: 154 RVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQVIMILQDLNDLEVAIEIPHRVML 213
           RV EA+ +L    I APFDG +  + ++    +     I+ +  L+ + V   +  + + 
Sbjct: 154 RVNEAEAQLSKKIIRAPFDGTLGIRMVDQGEYIATGTPIVEINMLDPIYVDYTLSEKNLP 213

Query: 214 SGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKV 273
           +       +A ++A+P Q F+  +   +T  + +++T  V     +     + PGM A V
Sbjct: 214 NVATGYPVVATVAAVPEQDFEGSVSAINTSVNPETRTVRVRATLSNPDNL-LRPGMFATV 272

Query: 274 IPVADKPADENTLITLPLTALVPDNQGKQFVWVVNAQNQ----AEKRYVDIGTTYKDRVV 329
           +    +  ++N ++T+P TA+  +  G  FV+VV   +       +R V  G T   RV 
Sbjct: 273 L---TQQPEDNEVVTVPRTAISYNTYG-DFVFVVEENDDGNLVVNRRTVTTGETRNTRVA 328

Query: 330 ITQHLKPGEQVIIAGVSSVREGMTV 354
           +   L+ GE V+  G+  +R G  V
Sbjct: 329 VLSGLEAGETVVEKGLLRLRAGQKV 353