Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  101 bits (251), Expect = 4e-26
 Identities = 100/372 (26%), Positives = 164/372 (44%), Gaps = 36/372 (9%)

Query: 16  LSAVIASALLLAGCG----EAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRAD 71
           L++VI+ AL +A C     +A    A    ++  + ++ A  +   +   G  +A   A+
Sbjct: 7   LASVISVALWMAACSPQEDKAAHGGAGPQSMEVGVIKVEAKPQVIKIELPGRSKAFLEAE 66

Query: 72  LAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAI-- 129
           +  +++G +T  +  EG  VK+G+ L  +DS   K AL +A  +L         AKA   
Sbjct: 67  VRPQVNGIITKRSFVEGGNVKQGESLYQIDSATYKAALVSANADLARANASLASAKAKAA 126

Query: 130 ----FEKTQAISKAELDKVTNRYD-------LAKNRVEEAKRKLEYTQITAPFDGVISEK 178
                 KT AISK + D+    Y        +A+  +  AK  LEYT++ AP  G I + 
Sbjct: 127 RYQQLVKTNAISKQDFDEADAAYKEALASVTVAEAAINTAKINLEYTEVLAPISGRIGKS 186

Query: 179 TIENFAQVQANQ--VIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLK 236
           ++   A V ANQ   +  +Q L+ + V I      +L  ++      +L A  N    L 
Sbjct: 187 SVTAGALVTANQSQTLATIQQLDPINVDIAQSSAQLLR-LKAKLKQGKLLAADNADVQLV 245

Query: 237 L----------RTYSTQPSSDSQTYSVVLG--FEDLKGFRVMPGMSAKVIPVADKPADEN 284
           L          +    + S D  T SV+L   F +  G  ++PGM  + +  A     + 
Sbjct: 246 LVDGTVYGHTGKLQFAEVSVDQNTGSVILRAEFPNPDGV-LLPGMYVRAMLNA---GTDP 301

Query: 285 TLITLPLTALVPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAG 344
             I +P  A+  + +G+    VVNAQ Q E + V        +  +T  L  G+QVI+ G
Sbjct: 302 QAILVPQKAITRNAKGEAVAMVVNAQGQVEAKIVTTAEVINHQWRVTSGLAVGDQVIVEG 361

Query: 345 VSSVREGMTVRP 356
           +  +R G  V P
Sbjct: 362 LQKIRPGAPVIP 373