Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  105 bits (263), Expect = 1e-27
 Identities = 90/346 (26%), Positives = 166/346 (47%), Gaps = 18/346 (5%)

Query: 16  LSAVIASALLLAGCGEAPQI-SAPAPV-VKPALT-EIVASQRASDLTFNGVVRAAQRADL 72
           L A +A+A+  +   +A +  SAP P+   P +T E+V    A  ++  G + A +   +
Sbjct: 10  LIATVATAVSFSDVLQAAKPESAPQPMRTVPVVTGEVVEHPLAQSVSLIGKLAADRAVVI 69

Query: 73  AFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEK 132
           A +++G++  IAV     VKKGQLL  LD   A+ A+  A   L +  ++ +  + +  +
Sbjct: 70  APQVTGKIKQIAVVSNQAVKKGQLLIELDDMKAQAAVAEANAFLNDETRKLKEFEKLISR 129

Query: 133 TQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQVI 192
             AI++ E+D      D+A+ R+  A+  L Y  + APF G            V     +
Sbjct: 130 -NAITQTEIDAQKASVDIARARLASAQADLHYHSLIAPFAGQTGLINFSEGKMVSTGNEL 188

Query: 193 MILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELS-AIPNQQFDLKLRTYSTQPSSDSQTY 251
           M L DL+ + + +++P    LS +     ++  S A P + F  K+     + + ++   
Sbjct: 189 MTLDDLSSMRLDLQVPEH-FLSQISIGMPVSSTSRAWPGETFIGKVVAIDPRVNEETLNL 247

Query: 252 SVVLGFEDLKGFRVMPGM---SAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVN 308
            + + FE+    R+ PGM   S    P    P        +P+ AL      K++V+VV 
Sbjct: 248 KIRVQFENTDN-RLKPGMMMSSTITFPPISAP-------IVPVQALEYSGT-KRYVYVVG 298

Query: 309 AQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTV 354
             + A +  V +G    D+V+I   LK G++V++ G+ ++R+G+ +
Sbjct: 299 EDHIAHRTEVILGARVGDQVLIDSGLKIGDKVVVQGLVNMRDGLKI 344