Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  107 bits (266), Expect = 6e-28
 Identities = 94/341 (27%), Positives = 164/341 (48%), Gaps = 20/341 (5%)

Query: 25  LLAGCGEAPQISAPAPVVKPA-LTEIVASQRASDLTFNGVVRAAQRADLAFRISGRLTDI 83
           +LA CGE            P   T ++    +S  +    + A Q A++  RI+G +  I
Sbjct: 18  MLAACGEEEVAKKEEKYAIPVETTTVIQGNVSSFYSTTATLEAPQEANVVSRIAGLIEVI 77

Query: 84  AVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQAISKAELDK 143
            V+EGD+VKKGQ LA +D++  +  L+ ++ E+K  EQE  R K +  K + IS   + K
Sbjct: 78  NVEEGDRVKKGQSLAIIDAKRQQYDLDRSEAEVKIIEQELNRLKKMNNK-EFISADSMAK 136

Query: 144 VTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIE--NFAQVQANQVIMILQDLNDL 201
           +      A  R + A+ +++ + + +P DG+I+++ ++  N A+   +   ++ QD  +L
Sbjct: 137 LEYNLQAAIARRDLAELQVKESHVVSPIDGIIAKRYVKAGNMAKEFGDLFYIVNQD--EL 194

Query: 202 EVAIEIPHRVMLSGVRNTRAIAELSAIPNQQ----FDLKLRTYSTQPSSDSQTYSVVLGF 257
              + +P + + S     R   E     NQQ     + K+   S      S T+ V L  
Sbjct: 195 HGIVHLPEQQLTS----LRLGQEAQVFSNQQSKNAINAKVLRISPVVDPQSGTFKVTLAV 250

Query: 258 EDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVNAQNQAEKRY 317
            + +  R+  GM  +V    D       +IT+P +AL+ +   KQ ++V+   N A +R 
Sbjct: 251 PN-QDARLKAGMFTRVELKYD---THENVITVPYSALI-NQDNKQALYVIAGTN-ANRRE 304

Query: 318 VDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRPYT 358
           V+IG    D V I   +KPGE V+  G  ++++   V   T
Sbjct: 305 VEIGYREGDAVEIVSGIKPGEVVVTRGQQNLKDQSLVEVIT 345