Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., HlyD family-related protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 99.8 bits (247), Expect = 1e-25
 Identities = 85/347 (24%), Positives = 157/347 (45%), Gaps = 12/347 (3%)

Query: 12  KRSLLSAVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRAS---DLTFNGVVRAAQ 68
           K+ ++   I +A         PQ  A   V  P    I A+  A    ++   G  +A +
Sbjct: 2   KKIIIIIAILAAAWFGYQAMQPQEQAKVQVKLPPNVVIAAAAMAQVRDEVEAIGTNKAYE 61

Query: 69  RADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKA 128
              +  +++  +T +   +GD VKKG LL  L + +    ++ AQ+++ + ++E  R  +
Sbjct: 62  SVTITPKVTDVVTSLKFDDGDIVKKGDLLVQLQNAEQLAKVKVAQVKVSDNQRELARISS 121

Query: 129 IFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQA 188
           +   ++ +++ E D++    D  +  +E+A+  L    I APF+G +  + +   + V  
Sbjct: 122 LVT-SRTVAELERDRLQTLIDTTRAELEQAQSSLNDRSIVAPFNGRLGLRQVSVGSLVTP 180

Query: 189 NQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDS 248
              I  L D++ +++   +P R +          A+  A P++ F  K +  S     + 
Sbjct: 181 GTEISTLDDISKIKLDFSVPERFIQELQPGKLVEAKAVAFPDEIF--KGKVISIDSRVNP 238

Query: 249 QTYSVVLGFE-DLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVV 307
            T +V++  E      R++PGM  KV  +          + LP +A++P  Q   FV+ V
Sbjct: 239 TTRAVIVRAEIPNHDLRLLPGMLMKVKLIKRS----REALMLPESAIIPI-QKSHFVYSV 293

Query: 308 NAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTV 354
           N  N  E++ V IG   +  V IT  L  GE V+I G+  V  G  V
Sbjct: 294 NKDNVIERKQVTIGIRTRGWVEITDGLAIGENVVIRGLLKVHPGDVV 340