Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 389 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 97.1 bits (240), Expect = 7e-25
 Identities = 100/385 (25%), Positives = 176/385 (45%), Gaps = 50/385 (12%)

Query: 6   TRSMAAKRSLLSAVIASALLLAGCGEA--------PQISAPAPVVKPALTEIVASQRASD 57
           T S A   +LL+  +A+A  + GC           P+++  AP V P +TE         
Sbjct: 6   TISRAVHIALLA--LATATGIYGCDSRNAYVPPPPPKVTVGAPHVGP-VTEY-------- 54

Query: 58  LTFNGVVRAAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELK 117
           + F+G + A +  D+  R++G L     ++G  V KG  L  ++    + AL+ A+ EL+
Sbjct: 55  MEFSGTIAAVESVDITARVTGTLRSAQFRDGSTVHKGDPLFIIEPEPYQAALQRAEAELE 114

Query: 118 NTEQEYRRAKAIFEKTQAI------SKAELDKVTNRYDLAKNRVEEAKRKLE-------Y 164
             +    RA+    +++ +      S+ ++ K   + D AK  +  AK ++E       Y
Sbjct: 115 VQQAALARAETELARSRKLLTEKAGSETDVVKWQQQRDSAKANISRAKAQIETARIDLGY 174

Query: 165 TQITAPFDGVISEKTIE--NFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAI 222
           T+ITAPFDG IS +  +  N     A   +  +   + + V   I  R +L  +   R  
Sbjct: 175 TRITAPFDGQISRRFADPGNVVGPGAVTRLATIVRRDQVHVYFNINERDLLR-LMAERPK 233

Query: 223 AELSAIPNQQFDLKLRTYSTQPSSDSQTYS-----VVLGFEDLKGF------RVMPGMSA 271
            + ++ P    +L L      P +    Y+        G   L+G       R++PG+ A
Sbjct: 234 PKTASAPTMPLELALADEDGFPHAGKLDYADPGVDPATGTMQLRGLFPNPSGRLLPGLFA 293

Query: 272 KVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVIT 331
           + I VA   +D+  ++  P  A+  D  G  +V +VNAQN AE+R V +G  ++   V++
Sbjct: 294 R-IRVAVGQSDKAMMV--PDRAIGQDQSGS-YVIIVNAQNIAEQRAVVLGPLHEGYRVVS 349

Query: 332 QHLKPGEQVIIAGVSSVREGMTVRP 356
           + L   ++V++ G+   R G  V P
Sbjct: 350 KGLSAEDRVVVNGIQRARPGSPVDP 374