Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., transmembrane protein precursor, possibly involved in transport (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  118 bits (296), Expect = 2e-31
 Identities = 94/347 (27%), Positives = 173/347 (49%), Gaps = 15/347 (4%)

Query: 15  LLSAVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAF 74
           LL+ ++   +LLA C +  QI+   P VK  +  ++++   + L F G V+AAQ   L+F
Sbjct: 7   LLTGILV--VLLASCSQRTQITDSKPTVK--IDTVLSAGGQTALQFPGRVKAAQDISLSF 62

Query: 75  RISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQ 134
           R+SG +  + V +G  V+KGQLLA LD  D +  L+AA+ E ++ + E  R  A++++  
Sbjct: 63  RVSGTILRMYVNDGTYVRKGQLLAELDPADYQIQLDAAEAEYQSVKAEAERVMALYKENV 122

Query: 135 AISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQVIMI 194
               A  DK          +   AK +LEYT++ APF G + ++  ++   + A   ++ 
Sbjct: 123 TTPDAN-DKAMYGLKQITAKYNHAKDQLEYTRLYAPFSGYVQKRLFDSHETIAAGMPVVS 181

Query: 195 LQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDSQTYSVV 254
           +      EV I +P    +   + T         P Q++ L L    T  ++ +Q Y++ 
Sbjct: 182 IISEGTPEVEINLPAVEYIRRQQFTGYTCTFDIYPGQEYALDLINV-TPKANANQLYTMR 240

Query: 255 LGFEDLKG-FRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVNAQNQA 313
           L  +  KG  + +P      +   +    E   +++P  A++ D +G   V++ +A ++ 
Sbjct: 241 LQLK--KGEAQALPSPGMNTMVTIECTEGEVRHLSVPTGAVLRD-KGMASVFLYDASSRT 297

Query: 314 EKRYVDIGTTY---KDRVVIT-QHLKPGEQVIIAGVSSVREGMTVRP 356
            +R  D+  T      R ++T + LKPG+ ++ +GV  V++G  V P
Sbjct: 298 IRR-CDVTVTRLLGSGRCLVTAEGLKPGDLIVASGVHHVKDGEQVEP 343