Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., component of multidrug efflux system (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  110 bits (274), Expect = 8e-29
 Identities = 84/341 (24%), Positives = 156/341 (45%), Gaps = 9/341 (2%)

Query: 17  SAVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAFRI 76
           S  I    LL  CG+  + +     VK A  E++      + +F  + +  +  +L+FR+
Sbjct: 7   SLCIFCLCLLTSCGKGEKKTNEPVRVKVAEAEMLVPSAEREFSF--IAKPFKETELSFRV 64

Query: 77  SGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQAI 136
            G +    V  G+   +G ++A +DSRD +   E A+      + E+ R K ++EK   +
Sbjct: 65  GGPIDHFEVYAGNYYHRGDIIAEIDSRDFRIRKERAEAIYHQAKAEFERIKVLYEKNN-L 123

Query: 137 SKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQVIMILQ 196
           S +  +K    Y  AK   E A  +LE T++ APFDG I E  IE +  V+A Q ++   
Sbjct: 124 SASAYEKARADYTSAKTAYETAVNELEDTKLIAPFDGYIGEVYIEKYQDVKATQSVVSFI 183

Query: 197 DLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDSQTYSVVLG 256
           D+  L++   +   +                 P   +  K+   S   + ++ ++ +   
Sbjct: 184 DITQLKIEAYVTQEIAFQAKEIKEVGIRFDVRPEAVYPAKVVEVSKSTTRNNLSFLMTAL 243

Query: 257 FEDLKGFRVMPGMSAKVIPVADKPADENT-LITLPLTALVPDNQGKQFVWVVN-AQNQAE 314
             + +G     G+S K++   D PA  +  ++T+P TAL        +VW+V+    Q  
Sbjct: 244 LPNKQG-EWPAGISGKML--LDLPATSSVPMVTVPQTALNHRPTEGDYVWMVDQTTGQVV 300

Query: 315 KRYVDIGTTYKD-RVVITQHLKPGEQVIIAGVSSVREGMTV 354
           KR V +G    + +V +   L+ G++V ++ +  + +GM V
Sbjct: 301 KRKVILGELLPNGKVEVKDGLQAGDKVAVSKLRFLSDGMPV 341