Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 320 a.a., RND transporter from Burkholderia phytofirmans PsJN

 Score = 92.4 bits (228), Expect = 1e-23
 Identities = 88/306 (28%), Positives = 135/306 (44%), Gaps = 15/306 (4%)

Query: 58  LTFNGVVRAAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELK 117
           L  +G V  +    L  R+ G L +I   +G  VK+GQLL  ++    +  L   Q EL 
Sbjct: 12  LDLSGTVAPSATVTLVARVQGVLKEIGFSDGANVKQGQLLFRIEPDTYRAQLTYDQAELV 71

Query: 118 NTEQEYRRAKAIFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISE 177
           N EQE  R K +     A S++ L K     D A  + + ++  L YT+I APF G I  
Sbjct: 72  NAEQELTRQKQL-TADNATSESSLQKAQTTRDQALAKRDMSRINLGYTEIRAPFSGRIGA 130

Query: 178 KTIE--NFAQVQANQVIMILQDLNDLEVAIEIPHR-----VMLSGVRNTRAIAELSAIPN 230
           ++ +  N      +  +  L  +  + V   +  R      + +    T  +  L A   
Sbjct: 131 RSFDVGNLVGASDSTKLATLDRIQPVYVNFTLNERDANRIGLFTKPPRTVRVNVLGAPAG 190

Query: 231 QQFDLKLRTYSTQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKV-IPVADKPADENTLITL 289
           +  D  L    T+  S S    +     + K   ++PGMS +V IP     A +N L+ +
Sbjct: 191 KGEDAALEFVDTRVDSSSGAIRLRADIAN-KDAHLIPGMSVEVHIPAG---APQNVLL-V 245

Query: 290 PLTALVPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVR 349
           P TAL+ +  G  FV VVN+ +  EKR V  G  +     IT  L  G+QV+  G  +V 
Sbjct: 246 PDTALLREQAG-AFVLVVNSASVIEKRAVVTGGLFGSLRAITSGLNAGDQVVTGGALAVA 304

Query: 350 EGMTVR 355
            G  V+
Sbjct: 305 PGTKVQ 310