Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  144 bits (363), Expect = 4e-39
 Identities = 97/353 (27%), Positives = 177/353 (50%), Gaps = 17/353 (4%)

Query: 19  VIASALLLAGCGEAPQISAPAPVVKPA-LTEIVASQRASDLTFNGVVRAAQRADLAFRIS 77
           +  + LLL GC E  QI     V +P  L ++  +   S   + G V + + A LAF + 
Sbjct: 14  IFGAVLLLVGC-EQSQIDTKETVSRPVKLLQVEQTPSTSTYRYPGSVSSVKEAVLAFEVP 72

Query: 78  GRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRR-AKAIFEKTQAI 136
           G++  + VKEGD VK+  +LA +D RD +  L++A+ +L   + +++R  KA+  K  A+
Sbjct: 73  GKVIKLHVKEGDFVKQDTVLAEIDDRDYQAQLDSAKSDLIVAKSDFQRYEKAL--KADAV 130

Query: 137 SKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQVIMILQ 196
           +     +     ++A+    +A + L  T++ APF G +  + I+ FA V A Q IM L 
Sbjct: 131 TPQAFQQAKRNLEVAQAAFNQADKALTETKLIAPFAGRVVTREIDLFATVHAKQPIMQLH 190

Query: 197 DLNDLEVAIEIPHRVMLSGVR---------NTRAIAELSAIPNQQFDLKLRTYSTQPSSD 247
             +  E+ + +P      G R         + +    L+A P+++F+ K+  +S Q  + 
Sbjct: 191 SESAYEMVVSVPESDWAQGERVNSAADIKLDNQLFVTLTAFPDKRFEGKITEFSGQADAA 250

Query: 248 SQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVV 307
           ++TY V + F       +  GM+   I ++    +   ++++PL A+V ++    FVW+ 
Sbjct: 251 TRTYKVKVAFSVPDKTPISSGMTGHAIYLSSN--ESTNILSIPLDAIVGNSDNSAFVWLY 308

Query: 308 NAQN-QAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRPYTD 359
           +  N Q  K+ + IG   +  V +   LK G+ + ++GV S+ +G  V P  D
Sbjct: 309 DPINGQVTKKSITIGNITEQTVNVLSGLKVGDVIAVSGVHSLYDGYPVYPMKD 361