Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  182 bits (463), Expect = 9e-51
 Identities = 121/356 (33%), Positives = 193/356 (54%), Gaps = 11/356 (3%)

Query: 9   MAAKRSLLSAVIASALLLAGCGEAPQISAPAPVVKPA-LTEIVASQRASDLTFNGVVRAA 67
           M + R L  A +  ALL A C  A + S  A  ++P  L E++  +     TF   V A 
Sbjct: 1   MKSYRLLPLAALLPALLTA-CTPA-ESSVQASAIRPVKLFEVMQLEGGDFRTFPARVSAN 58

Query: 68  QRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAK 127
            RA+L+FRISG LTD+A+ EG Q+++G LLA LD RDA   L   + E +    +++R K
Sbjct: 59  SRAELSFRISGELTDLALVEGQQIRQGSLLAKLDDRDAYNNLMTREAEHELLAADFQR-K 117

Query: 128 AIFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQ 187
               K + IS+AE D    +   AK  +  A+ +L YT++ APF G ++++ ++N   VQ
Sbjct: 118 TELLKRKLISQAEFDSAQAQLKSAKAALAAARDQLSYTKLIAPFSGTVAKRLVDNHQIVQ 177

Query: 188 ANQVIMILQDLNDLEVAIEIPHRVMLS-----GVRNTRAIAELSAIPNQQFDLKLRTYST 242
           ANQ I+ LQ+ + L+V+I++P  +  S       +N  A    SA+   +FD K + YST
Sbjct: 178 ANQGILTLQNNSLLDVSIQVPEAMAASLNNYIQQQNFTAKVRFSALAGMEFDAKFKEYST 237

Query: 243 QPSSDSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTAL-VPDNQGK 301
           Q +  +Q Y VV      K  +++PGMSA++     K  D+     +P+TA+   D  G+
Sbjct: 238 QVTPGTQAYEVVFSLPQPKDIQLLPGMSAELTLALVKTPDQTASAIVPVTAIDKRDQDGQ 297

Query: 302 QFVWVVNAQN-QAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRP 356
             VWV  AQ+ + +   V +G    + + +   +  G+ ++ AGVS + +GM V+P
Sbjct: 298 VQVWVYQAQSGEVKPTAVTLGRVTTEGIEVLGGINKGDLIVSAGVSQLSDGMKVKP 353